Index (PULsE 1.98 API)

A B C D E F G H I J K L M N O P Q R S T U V W X Y Z _
All Classes All Packages

A

a - Variable in class pulse.problem.schemes.rte.dom.HermiteInterpolator
abbreviation(boolean) - Method in class pulse.properties.Flag
abbreviations() - Method in class pulse.tasks.processing.ResultFormat: Creates a List<String> of default abbreviations corresponding to the list of keywords specific to NumericProperty objects.
ABNORMAL_DISTRIBUTION_OF_RESIDUALS - pulse.tasks.logs.Details
ABS - Static variable in class pulse.math.transforms.StandardTransformations
AbsoluteDeviations - Class in pulse.search.statistics: A statistical optimality criterion relying on absolute deviations or the L1 norm condition.
AbsoluteDeviations() - Constructor for class pulse.search.statistics.AbsoluteDeviations
AbsoluteDeviations(AbsoluteDeviations) - Constructor for class pulse.search.statistics.AbsoluteDeviations
absorption(SpectralRange, double) - Method in class pulse.problem.statements.model.AbsorptionModel
absorption(SpectralRange, double) - Method in class pulse.problem.statements.model.BeerLambertAbsorption
absorption(SpectralRange, double) - Method in class pulse.problem.statements.model.Insulator
AbsorptionModel - Class in pulse.problem.statements.model
AbsorptionModel() - Constructor for class pulse.problem.statements.model.AbsorptionModel
AbsorptionModel(AbsorptionModel) - Constructor for class pulse.problem.statements.model.AbsorptionModel
AbstractData - Class in pulse: A named collection of time and temperature values, with user-adjustable number of entries.
AbstractData() - Constructor for class pulse.AbstractData: Creates an AbstractData with the default number of points (set in the corresponding XML file).
AbstractData(List<Double>, String) - Constructor for class pulse.AbstractData
AbstractData(AbstractData) - Constructor for class pulse.AbstractData: Copy constructor.
AbstractData(NumericProperty) - Constructor for class pulse.AbstractData: Creates a AbstractData, where the number of elements in the time and temperature collections are set to count.getValue().
AbstractHandler - Interface in pulse.io.readers: There are two types of AbstractHandlers, which are used to either update/populate existing objects or convert data into new objects of a given type.
AbstractIntegrator - Class in pulse.math: An AbstractIntegrator serves to calculate the definite integral of a function.
AbstractIntegrator(Segment) - Constructor for class pulse.math.AbstractIntegrator: Creates an AbstractIntegrator with the specified integration bounds.
AbstractLogger - Class in pulse.tasks.logs
AbstractLogger() - Constructor for class pulse.tasks.logs.AbstractLogger
AbstractPopulator<T> - Interface in pulse.io.readers: An AbstractPopulator provides the ability to add extra content to an object by modifying its internal structure to make it compliant with an external file.
AbstractReader<T> - Interface in pulse.io.readers: Basic interface for readers in PULsE.
AbstractResult - Class in pulse.tasks.processing: An AbstractResult is either an individual, independent Result, a Result that forms a part of the AverageResult, or the AverageResult, which combines other Results.
AbstractResult(AbstractResult) - Constructor for class pulse.tasks.processing.AbstractResult
AbstractResult(ResultFormat) - Constructor for class pulse.tasks.processing.AbstractResult: Constructs an AbstractResult with the list of properties specified by format.
access(String) - Method in class pulse.util.Group: Searches for a specific Accessible with a simpleName.
Accessible - Class in pulse.util: An Accessible provides Reflection-based read- and write-access to the underlying (usually declared as its own fields - but not necessarily) instances of Property and a recursive access to other Accessible, which may have a family relationship with this Accessible via the UpwardsNavigable implementation.
Accessible() - Constructor for class pulse.util.Accessible
accessibleChildren() - Method in class pulse.util.Accessible: Selects only those Accessibles, the parent of which is this.
accessibleRange() - Method in interface pulse.Response
accessibleRange() - Method in class pulse.search.SimpleResponse
accessibleRange() - Method in class pulse.tasks.Calculation
AccessibleTableRenderer - Class in pulse.ui.components.controllers
AccessibleTableRenderer() - Constructor for class pulse.ui.components.controllers.AccessibleTableRenderer
action() - Method in interface pulse.ui.frames.dialogs.ProgressDialog.ProgressWorker
ActiveFlags - Class in pulse.search.direction
activeParameters() - Method in class pulse.search.GeneralTask
activeParameters() - Method in class pulse.search.SimpleOptimisationTask
activeParameters() - Method in class pulse.tasks.SearchTask: Finds what properties are being altered in the search of this SearchTask.
actualNumPoints() - Method in class pulse.AbstractData: The actual number of points, explicitly calculated as the size of the internal lists.
AdaptiveIntegrator - Class in pulse.problem.schemes.rte.dom: An ODE integrator with an adaptive step size.
AdaptiveIntegrator(Discretisation) - Constructor for class pulse.problem.schemes.rte.dom.AdaptiveIntegrator
add(Parameter) - Method in class pulse.math.ParameterVector
add(ParameterIdentifier, int) - Method in class pulse.ui.components.LogChart
add(ImmutableDataEntry<Double, Double>) - Method in class pulse.input.InterpolationDataset: Adds entry to this InterpolationDataset.
addAssignmentListener(AssignmentListener) - Method in class pulse.math.filters.OptimisablePolyline
addDataListener(DataListener) - Method in class pulse.input.ExperimentalData
addElement(NumericPropertyKeyword) - Method in class pulse.ui.components.models.SelectedKeysModel
addExitRequestListener(ExitRequestListener) - Method in class pulse.ui.components.PulseMainMenu
addExternalDatasetListener(ExternalDatasetListener) - Method in class pulse.tasks.TaskManager
addFrameCreationListener(PreviewFrameCreationListener) - Method in class pulse.ui.frames.ResultFrame
addFrameVisibilityRequestListener(FrameVisibilityRequestListener) - Method in class pulse.ui.components.PulseMainMenu
addHeatingCurveListener(HeatingCurveListener) - Method in class pulse.HeatingCurve
addHierarchyListener(HierarchyListener) - Method in class pulse.util.UpwardsNavigable
addListener(LogEntryListener) - Method in class pulse.tasks.logs.Log
addListener(ResultListener) - Method in class pulse.ui.components.models.ResultTableModel
addListener(DescriptorChangeListener) - Method in class pulse.util.DiscreteSelector
addListener(DescriptorChangeListener) - Method in class pulse.util.InstanceDescriptor
addListener(PropertyHolderListener) - Method in class pulse.util.PropertyHolder
addLogListener(LogListener) - Method in class pulse.ui.components.panels.LogToolbar
addPlotRequestListener(PlotRequestListener) - Method in class pulse.ui.components.panels.ChartToolbar
addPlotRequestListener(PlotRequestListener) - Method in class pulse.ui.components.panels.OpacitySlider
addPoint(double, double) - Method in class pulse.AbstractData: Adds a time-signal pair to the lists.
addPoint(double, double) - Method in class pulse.input.ExperimentalData: Adds time and temperature to the respective Lists.
addPoint(double, double) - Method in class pulse.problem.laser.NumericPulseData: Adds a data point to the internal storage and increments counter.
addProblemSelectionListener(ProblemSelectionListener) - Method in class pulse.ui.components.ProblemTree
addProperty(NumericProperty) - Method in class pulse.tasks.processing.AbstractResult
addResultFormatListener(ResultFormatListener) - Static method in class pulse.tasks.processing.ResultFormat
addResultRequestListener(ResultRequestListener) - Method in class pulse.ui.components.panels.ResultToolbar
addRow(AbstractResult) - Method in class pulse.ui.components.models.ResultTableModel
addRTEListener(RTECalculationListener) - Method in class pulse.problem.schemes.rte.RadiativeTransferSolver: Adds a listener that can listen to status updates.
addSelectionListener(TaskSelectionListener) - Method in class pulse.tasks.TaskManager
addSessionListener(SessionListener) - Static method in class pulse.tasks.TaskManager
addStatusChangeListener(StatusChangeListener) - Method in class pulse.tasks.SearchTask
addTask(SearchTask) - Method in class pulse.tasks.TaskManager: If a task equal to t has already been previously loaded, does nothing.
addTask(SearchTask) - Method in class pulse.ui.components.models.TaskTableModel
addTaskActionListener(TaskActionListener) - Method in class pulse.ui.components.panels.TaskToolbar
addTaskListener(DataCollectionListener) - Method in class pulse.tasks.SearchTask
addTaskRepositoryListener(TaskRepositoryListener) - Method in class pulse.tasks.TaskManager
AdiabaticSolution - Class in pulse.problem.statements
ADILinearisedSolver - Class in pulse.problem.schemes.solvers: An alternating direction implicit (ADI) solver for a classical two-dimensional linearised problem.
ADILinearisedSolver() - Constructor for class pulse.problem.schemes.solvers.ADILinearisedSolver
ADILinearisedSolver(NumericProperty, NumericProperty) - Constructor for class pulse.problem.schemes.solvers.ADILinearisedSolver
ADILinearisedSolver(NumericProperty, NumericProperty, NumericProperty) - Constructor for class pulse.problem.schemes.solvers.ADILinearisedSolver
ADIScheme - Class in pulse.problem.schemes: An ADIScheme uses a Grid2D to provide numerical capabilities needed to solve a Problem.
ADIScheme() - Constructor for class pulse.problem.schemes.ADIScheme: Creates a new ADIScheme with default values of grid density and time factor.
ADIScheme(NumericProperty, NumericProperty) - Constructor for class pulse.problem.schemes.ADIScheme: Creates an ADIScheme with the specified arguments.
ADIScheme(NumericProperty, NumericProperty, NumericProperty) - Constructor for class pulse.problem.schemes.ADIScheme: Creates an ADIScheme with the specified arguments.
AdjustableBaseline - Class in pulse.baseline: A baseline that can shift in the vertical direction.
AdjustableBaseline(double, double) - Constructor for class pulse.baseline.AdjustableBaseline: Creates a flat baseline equal to the argument.
adjustStepSize(DiscretePulse) - Method in class pulse.problem.schemes.Grid2D: Calls the adjustTo method from superclass, then adjusts the gridDensity of the grid if discretePulseSpot < (Grid2D)grid.hy.
adopt(ParticleState) - Method in class pulse.search.direction.pso.Particle
AICStatistic - Class in pulse.search.statistics: AIC algorithm: Banks, H.
AICStatistic() - Constructor for class pulse.search.statistics.AICStatistic
AICStatistic(ModelSelectionCriterion) - Constructor for class pulse.search.statistics.AICStatistic
AICStatistic(OptimiserStatistic) - Constructor for class pulse.search.statistics.AICStatistic
allDescriptors(Class<T>) - Static method in interface pulse.util.Reflexive
allFlags() - Static method in class pulse.properties.Flag: List of all possible Flags that can be used in finding the reverse solution of the heat conduction problems.
allGrouppedContents() - Method in class pulse.tasks.TaskManager
allSubclassesNames(Class<T>) - Static method in interface pulse.util.Reflexive
alteredParameters() - Method in class pulse.tasks.SearchTask
AMBIGUOUS - pulse.tasks.logs.Status: Task has finished, but the results cannot be considered reliable (perhaps, due to large scatter of data points).
AndersonDarlingTest - Class in pulse.search.statistics: The Anderson-Darling normality test.
AndersonDarlingTest() - Constructor for class pulse.search.statistics.AndersonDarlingTest
apparentMaximum() - Method in class pulse.AbstractData: Calculates the simple maximum signal.
apply(double[]) - Method in interface pulse.math.Window
apply(Baseline) - Method in class pulse.HeatingCurve: Adds the baseline value to each element of the signal list.
approximatelyEquals(double, double) - Static method in class pulse.math.MathUtils: Checks if two numbers are approximately equal by comparing the modulus of their difference to 1.0E-5.
areDetailsHidden() - Method in class pulse.problem.schemes.DifferenceScheme: If true, Lets the UI know that the user only wants to have the most important properties displayed.
areDetailsHidden() - Method in class pulse.problem.statements.model.ThermalProperties: Hides optimiser directives
areDetailsHidden() - Method in class pulse.problem.statements.Problem: Checks whether some 'advanced' details should stay hidden by the GUI when customising the Problem statement.
areDetailsHidden() - Method in class pulse.util.PropertyHolder: By default, this is set to false.
areHtmlTagsAdded() - Method in class pulse.properties.NumericPropertyFormatter
areThermalPropertiesLoaded() - Method in class pulse.problem.statements.model.ThermalProperties
askToExport(T, JFrame, String) - Static method in class pulse.io.export.ExportManager: Finds an exporter matching to target and allows the user to select the location of export.
askToExport(T, JFrame, String, File) - Method in interface pulse.io.export.Exporter: Provides a JFileChooser for the user to select the export destination for target.
assign(ParameterVector) - Method in class pulse.baseline.AdjustableBaseline
assign(ParameterVector) - Method in class pulse.baseline.LinearBaseline: Assigns parameter values of this Problem using the optimisation vector params.
assign(ParameterVector) - Method in class pulse.baseline.SinusoidalBaseline
assign(ParameterVector) - Method in class pulse.input.Range: Tries to assign the upper and lower bound based on params.
assign(ParameterVector) - Method in class pulse.math.filters.OptimisablePolyline
assign(ParameterVector) - Method in class pulse.math.Harmonic
assign(ParameterVector) - Method in class pulse.problem.statements.ClassicalProblem
assign(ParameterVector) - Method in class pulse.problem.statements.ClassicalProblem2D
assign(ParameterVector) - Method in class pulse.problem.statements.DiathermicMedium
assign(ParameterVector) - Method in class pulse.problem.statements.model.AbsorptionModel
assign(ParameterVector) - Method in class pulse.problem.statements.model.ThermoOpticalProperties
assign(ParameterVector) - Method in class pulse.problem.statements.NonlinearProblem: Does the same as super-class method plus updates the laser energy, if needed.
assign(ParameterVector) - Method in class pulse.problem.statements.ParticipatingMedium
assign(ParameterVector) - Method in class pulse.problem.statements.PenetrationProblem
assign(ParameterVector) - Method in class pulse.problem.statements.Problem: Assigns parameter values of this Problem using the optimisation vector params.
assign(ParameterVector) - Method in class pulse.problem.statements.TwoTemperatureModel
assign(ParameterVector) - Method in class pulse.search.GeneralTask: Tries to assign a selected set of parameters to the search vector used in optimisation.
assign(ParameterVector) - Method in interface pulse.search.Optimisable: Assigns parameter values of this Optimisable using the optimisation vector params.
assign(ParameterVector) - Method in class pulse.search.SimpleOptimisationTask
assign(ParameterVector) - Method in class pulse.tasks.SearchTask: Assigns the values of the parameters of this SearchTask to searchParameters.
AssignmentListener - Interface in pulse.math.filters
asSquareMatrix(RectangularMatrix) - Static method in class pulse.math.linear.SquareMatrix
assumeNewState(TaskManager) - Static method in class pulse.tasks.TaskManager
atanh(double) - Static method in class pulse.math.MathUtils: Calculate the hyperbolic arctangent (exact).
AtanhTransform - Class in pulse.math.transforms: Hyper-tangent parameter transform allowing to set an upper bound for a parameter.
AtanhTransform(Segment) - Constructor for class pulse.math.transforms.AtanhTransform: Only the upper bound of the argument is used.
ATOL - pulse.properties.NumericPropertyKeyword: Absolute tolerance (atol) for RK calculations (RTE).
attemptMove(Particle, Particle[], ParticleState) - Method in class pulse.search.direction.pso.ConstrictionMover
attemptMove(Particle, Particle[], ParticleState) - Method in class pulse.search.direction.pso.FIPSMover
attemptMove(Particle, Particle[], ParticleState) - Method in interface pulse.search.direction.pso.Mover
attemptUpdate(Object) - Method in class pulse.properties.Flag
attemptUpdate(Object) - Method in class pulse.properties.NumericProperty
attemptUpdate(Object) - Method in interface pulse.properties.Property
attemptUpdate(Object) - Method in class pulse.properties.SampleName
attemptUpdate(Object) - Method in class pulse.util.DiscreteSelector
attemptUpdate(Object) - Method in class pulse.util.InstanceDescriptor
AuxPlotter<T> - Class in pulse.ui.components
AuxPlotter() - Constructor for class pulse.ui.components.AuxPlotter
AuxPlotter(String, String) - Constructor for class pulse.ui.components.AuxPlotter
availableProperties() - Static method in class pulse.search.direction.ActiveFlags
availableSolutions() - Method in class pulse.problem.statements.Problem: Lists the available DifferenceSchemes for this Problem.
average(NumericPropertyKeyword) - Method in class pulse.tasks.processing.Buffer: Calculates the average for the index -- if the respective NumericProperty is contained in the IndexedVector data of this Buffer.
AverageResult - Class in pulse.tasks.processing: An AverageResult is obtained by averaging a list of AbstractResults and calculating the associated errors of averaging.
AverageResult(List<AbstractResult>, ResultFormat) - Constructor for class pulse.tasks.processing.AverageResult: This will create an AverageResult based on the AbstractResult in res.
averageStatistic() - Method in class pulse.tasks.processing.Buffer: Calculates the average statistic value
AWAITING_TERMINATION - pulse.tasks.logs.Status: Termination requested.
AXIAL_COATING_THICKNESS - pulse.properties.NumericPropertyKeyword: Not implemented yet.

B

Baseline - Class in pulse.baseline: An abstract class for baseline calculations.
Baseline() - Constructor for class pulse.baseline.Baseline
BASELINE_AMPLITUDE - pulse.properties.NumericPropertyKeyword: Amplitude of the sinusoidal baseline.
BASELINE_COLUMN - Static variable in class pulse.ui.components.models.StoredCalculationTableModel
BASELINE_FREQUENCY - pulse.properties.NumericPropertyKeyword: Frequency of the sinusoidal baseline.
BASELINE_INTERCEPT - pulse.properties.NumericPropertyKeyword: The baseline intercept value.
BASELINE_PHASE_SHIFT - pulse.properties.NumericPropertyKeyword: Phase shift of the sinusoidal baseline.
BASELINE_SLOPE - pulse.properties.NumericPropertyKeyword: The baseline slope (for linear baselines).
BeerLambertAbsorption - Class in pulse.problem.statements.model
BeerLambertAbsorption() - Constructor for class pulse.problem.statements.model.BeerLambertAbsorption
BeerLambertAbsorption(AbsorptionModel) - Constructor for class pulse.problem.statements.model.BeerLambertAbsorption
BEST_MODEL_SELECTED - pulse.tasks.listeners.TaskRepositoryEvent.State: Indicates the task has discarded superfluous calculations.
bestSoFar() - Method in class pulse.search.direction.pso.SwarmState: Returns the best state achieved by any particle so far.
beta(double, double, int) - Method in class pulse.problem.schemes.TridiagonalMatrixAlgorithm
BETTER_CALCULATION_RESULTS_THAN_PREVIOUSLY_OBTAINED - pulse.tasks.logs.Details: Indicates that the result table had been updated, as the current model selection criterion showed better result than already present.
BFGSOptimiser - Class in pulse.search.direction: The 'advanced' PathSolver implementing the variable-metric (quasi-Newton) search method.
Bi1HTAU - Variable in class pulse.problem.schemes.solvers.ImplicitLinearisedSolver
BICStatistic - Class in pulse.search.statistics: Bayesian Information Criterion (BIC) algorithm formulated for the Gaussian distribution of residuals.
BICStatistic() - Constructor for class pulse.search.statistics.BICStatistic
BICStatistic(ModelSelectionCriterion) - Constructor for class pulse.search.statistics.BICStatistic
BICStatistic(OptimiserStatistic) - Constructor for class pulse.search.statistics.BICStatistic
binomial(int, int) - Static method in class pulse.math.LegendrePoly: Fast calculation of binomial coefficient C_m^k = m!/(k!(m-k)!)
BlackbodySpectrum - Class in pulse.problem.schemes.rte: Contains methods for calculating the integral spectral characteristics of a black body with a specific spatial temperature profile.
BlackbodySpectrum(NonlinearProblem) - Constructor for class pulse.problem.schemes.rte.BlackbodySpectrum: Creates a BlackbodySpectrum.
BLACKMANN_HARRIS - Static variable in interface pulse.math.Window
blend(Color, Color, float) - Static method in class pulse.util.ImageUtils: Credit to bmauter (https://stackoverflow.com/questions/19398238/how-to-mix-two-int-colors-correctly)
blockDiagonal() - Method in class pulse.math.linear.SquareMatrix: Creates a block-diagonal matrix from the diagonal of this matrix.
BlockMatrixAlgorithm - Class in pulse.problem.schemes: A modification of the algorithm for solving a system of linear equations, where the first and last equation contains references to the last and first elements of the solution, respectively.
BlockMatrixAlgorithm(Grid) - Constructor for class pulse.problem.schemes.BlockMatrixAlgorithm
bMinusA - Variable in class pulse.problem.schemes.rte.dom.HermiteInterpolator
BoundedParameterTransform - Class in pulse.math.transforms: An abstract Transformable where the bounds of the parameter is manually set.
BoundedParameterTransform(Segment) - Constructor for class pulse.math.transforms.BoundedParameterTransform
boundLimits(boolean) - Method in class pulse.input.Range: Calculates the allowed range for either the upper or lower bound.
bounds() - Method in interface pulse.DiscreteInput
boundsFrom(NumericPropertyKeyword) - Static method in class pulse.math.Segment: Creates a segment representing the bounds of p, i.e.
Buffer - Class in pulse.tasks.processing: A Buffer is used to estimate the convergence of the reverse problem solution, by comparing the variance of the properties to a pre-specified error tolerance.
Buffer() - Constructor for class pulse.tasks.processing.Buffer: Creates a Buffer with a default size.
BUFFER_SIZE - pulse.properties.NumericPropertyKeyword: The buffer size that is used to establish whether results are converging.
ButcherTableau - Class in pulse.problem.schemes.rte.dom: The Butcher tableau coefficients used by the explicit Runge-Kutta solvers.
ButcherTableau(String, double[][], double[], double[], double[], boolean) - Constructor for class pulse.problem.schemes.rte.dom.ButcherTableau
ButcherTableauReader - Class in pulse.io.readers: Provides a reader class for Butcher tableaux.
ButtonEditor - Class in pulse.ui.components.controllers
ButtonEditor(AbstractButton, PropertyHolder) - Constructor for class pulse.ui.components.controllers.ButtonEditor
ButtonEditor(IconCheckBox, NumericPropertyKeyword) - Constructor for class pulse.ui.components.controllers.ButtonEditor

C

C1 - Static variable in class pulse.search.linear.WolfeOptimiser: The constant used in the Armijo inequality, equal to 0.05.
C2 - Static variable in class pulse.search.linear.WolfeOptimiser: The constant used in the strong Wolfe inequality for the modulus of the gradient projection, equal to 0.8.
calcCriterion() - Method in class pulse.search.statistics.ModelSelectionCriterion: This calculates either the AIC or BIC statistic, which only differ by the penalising term.
calculate() - Method in class pulse.math.filters.HalfTimeCalculator: Calculates the approximate half-rise time used for crude estimation of thermal diffusivity.
calculateEmissivity() - Method in class pulse.problem.statements.model.ThermalProperties
calculateResiduals(DiscreteInput, Response) - Method in class pulse.search.statistics.ResidualStatistic
calculateResiduals(DiscreteInput, Response, int, int) - Method in class pulse.search.statistics.ResidualStatistic: This will calculate the residuals for the task using the time sequence defined by the ExperimentalData object.The residuals are calculated between the model, which was previously used to populate the HeatingCurveand the experimental data.The temperature value of the model at the reference time is $t_{i}$ .and unknown a priori.
calculateResiduals(GeneralTask) - Method in class pulse.search.statistics.ResidualStatistic
Calculation - Class in pulse.tasks
Calculation(Calculation) - Constructor for class pulse.tasks.Calculation: Creates an orphan Calculation, retaining some properties of the argument
Calculation(SearchTask) - Constructor for class pulse.tasks.Calculation
CALCULATION_FINISHED - pulse.input.listeners.CurveEventType: A calculation associated with this curve has finished and the required arrays have been filled.
CALCULATION_RESULTS_WORSE_THAN_PREVIOUSLY_OBTAINED - pulse.tasks.logs.Details: Indicates that the result table had not been updated, as the selected model produced results worse than expected by the model selection criterion.
CalculationTable - Class in pulse.ui.components
CalculationTable() - Constructor for class pulse.ui.components.CalculationTable
callUpdate() - Method in class pulse.tasks.logs.AbstractLogger
cancelAllTasks() - Method in class pulse.tasks.TaskManager: This will terminate all tasks in this TaskManager and trigger a SHUTDOWN TaskRepositoryEvent.
ChandrasekharsQuadrature - Class in pulse.problem.schemes.rte.exact: This quadrature methods of evaluating the composition product of the exponential integral and blackbody spectral power spectrum has been given by Chandrasekhar and is based on constructing a moment matrix.
ChandrasekharsQuadrature() - Constructor for class pulse.problem.schemes.rte.exact.ChandrasekharsQuadrature: Constructs a ChandrasekharsQuadrature object with a default number of nodes, a LaguerreSolver with default precision and integration bounds set to [0,1].
changeAxis(boolean) - Method in class pulse.ui.components.LogChart
changeFormat(ResultFormat) - Method in class pulse.ui.components.models.ResultTableModel
characteristicTime() - Method in class pulse.problem.statements.model.ThermalProperties: Performs simple calculation of the l²/a factor that is commonly used to evaluate the dimensionless time t/timeFactor.
Chart - Class in pulse.ui.components
Chart() - Constructor for class pulse.ui.components.Chart
chartMouseClicked(ChartMouseEvent) - Method in class pulse.ui.components.listeners.MouseOnMarkerListener
chartMouseMoved(ChartMouseEvent) - Method in class pulse.ui.components.listeners.MouseOnMarkerListener
ChartToolbar - Class in pulse.ui.components.panels
ChartToolbar() - Constructor for class pulse.ui.components.panels.ChartToolbar
checkArrays() - Method in class pulse.problem.schemes.rte.Fluxes: Checks whether all stored values are finite.
checkNewVersion() - Method in class pulse.ui.Version
checkProblems() - Method in class pulse.tasks.SearchTask: Checks if this SearchTask is ready to be run.Performs basic check to see whether the user has uploaded all necessary data.
checkProblemStatementSet() - Method in enum pulse.tasks.logs.Status
children() - Method in class pulse.util.Group: Selects only those Accessibles, the parent of which is this.
classesIn(String) - Static method in class pulse.util.ReflexiveFinder: Uses Java Reflection API to find all classes within the package named pckgname.
ClassicalProblem - Class in pulse.problem.statements: The simplest problem statement supported in PULsE, which is formulated in the dimensionless form and with linearised boundary conditions.
ClassicalProblem() - Constructor for class pulse.problem.statements.ClassicalProblem
ClassicalProblem(Problem) - Constructor for class pulse.problem.statements.ClassicalProblem
ClassicalProblem2D - Class in pulse.problem.statements: The complete problem statement for a fully two-dimensional problem, which includes side heat losses, a variable field of view and variable pulse-to-diameter ratio.
ClassicalProblem2D() - Constructor for class pulse.problem.statements.ClassicalProblem2D
ClassicalProblem2D(Problem) - Constructor for class pulse.problem.statements.ClassicalProblem2D
classicSolution(Problem) - Static method in class pulse.problem.statements.AdiabaticSolution: Calculates the classic solution, using the default value of the precision and the time limit specified by the HeatingCurve of p.
classicSolution(Problem, double) - Static method in class pulse.problem.statements.AdiabaticSolution
classicSolution(Problem, double, int) - Static method in class pulse.problem.statements.AdiabaticSolution: A static factory method for calculating a heating curve based on the analytical solution of Parker et al.
clear() - Method in class pulse.AbstractData: Clears all elements from the three List objects, thus releasing memory.
clear() - Method in class pulse.HeatingCurve
clear() - Method in class pulse.problem.schemes.rte.dom.HermiteInterpolator
clear() - Method in class pulse.tasks.Calculation
clear() - Method in class pulse.tasks.logs.AbstractLogger
clear() - Method in class pulse.tasks.processing.CorrelationBuffer
clear() - Method in class pulse.tasks.SearchTask: Resets everything to default values (for a list of default values please see the .xml document.
clear() - Method in class pulse.tasks.TaskManager: Purges all tasks from this TaskManager.
clear() - Method in class pulse.ui.components.GraphicalLogPane
clear() - Method in class pulse.ui.components.LogChart
clear() - Method in class pulse.ui.components.models.ResultTableModel
clear() - Method in class pulse.ui.components.ResultTable
clear() - Method in class pulse.ui.components.TextLogPane
clearArrays() - Method in class pulse.problem.schemes.DifferenceScheme
clearArrays() - Method in class pulse.problem.schemes.OneDimensionalScheme
clearArrays() - Method in class pulse.problem.schemes.solvers.ADILinearisedSolver
clearDataListener() - Method in class pulse.input.ExperimentalData
closestLeft(double, List<Double>) - Static method in class pulse.input.IndexRange: Searches through the elements contained in the the second argument of this method to find an element belonging to in most closely resembling the first argument.
closestRight(double, List<Double>) - Static method in class pulse.input.IndexRange: Searches through the elements contained in the the second argument of this method to find an element belonging to in most closely resembling the first argument.
COATING_DIFFUSIVITY - pulse.properties.NumericPropertyKeyword: Not implemented yet.
coefficients() - Method in class pulse.math.LegendrePoly: This will generate the coefficients for the Legendre polynomial, arranged in order of significance (from x⁰ to xⁿ).
ColorGenerator - Class in pulse.ui
ColorGenerator() - Constructor for class pulse.ui.ColorGenerator
COMBINED_ABSORPTIVITY - pulse.properties.NumericPropertyKeyword: A directive to the optimiser informing both front and rear side absorptivities must be equal.
compare(NumericProperty, NumericProperty) - Static method in class pulse.properties.NumericProperties: Compares the numeric values of this NumericProperty and arg0
compare(NumericProperty, NumericProperty) - Method in class pulse.ui.components.controllers.NumericPropertyComparator
compareTo(Harmonic) - Method in class pulse.math.Harmonic
compareTo(NumericProperty) - Method in class pulse.properties.NumericProperty
compareTo(Calculation) - Method in class pulse.tasks.Calculation: Compares two calculations based on their model selection criteria.
compareToThreshold(double) - Method in class pulse.search.statistics.CorrelationTest
compatibleWith(OptimiserStatistic) - Method in class pulse.search.direction.LMOptimiser: The Levenberg-Marquardt optimiser will only accept ordinary least-squares as its objective function.
compatibleWith(OptimiserStatistic) - Method in class pulse.search.direction.PathOptimiser: Checks if this optimiser is compatible with the statistic passed to the method as its argument.By default, this will accept any OptimiserStatistic
compatibleWith(OptimiserStatistic) - Method in class pulse.search.direction.pso.ParticleSwarmOptimiser
ComplexPath - Class in pulse.search.direction: A more complex version of Path, which in addition to other variables stores the Hessian matrix at the current step.
ComplexPath(GeneralTask) - Constructor for class pulse.search.direction.ComplexPath
CompositeGaussianQuadrature - Class in pulse.problem.schemes.rte.dom: A composite Gaussian quadrature for numerical evaluation of the scattering integral in one-dimensional heat transfer.
CompositeGaussianQuadrature(int) - Constructor for class pulse.problem.schemes.rte.dom.CompositeGaussianQuadrature: Constructs a composite Gaussian quadrature for an even n
CompositePathOptimiser - Class in pulse.search.direction
CompositePathOptimiser() - Constructor for class pulse.search.direction.CompositePathOptimiser
CompositionProduct - Class in pulse.problem.schemes.rte.exact: A class for evaluating the definite integral $∫$ _a^b f(x) E_n (α + β x) dx}.
CompositionProduct(Segment) - Constructor for class pulse.problem.schemes.rte.exact.CompositionProduct: Constructs the composition product with the specified integration bounds.
compute(double[]) - Method in class pulse.problem.schemes.rte.dom.DiscreteOrdinatesMethod
compute(double[]) - Method in class pulse.problem.schemes.rte.exact.NonscatteringAnalyticalDerivatives: Evaluates fluxes and their derivatives using analytical formulae and the selected numerical quadrature.Usually works best with the ChandrasekharsQuadrature
compute(double[]) - Method in class pulse.problem.schemes.rte.exact.NonscatteringDiscreteDerivatives
compute(double[]) - Method in class pulse.problem.schemes.rte.exact.NonscatteringRadiativeTransfer: The superclass method will update the interpolation that the blackbody spectrum uses to evaluate the temperature profile and calculate the radiosities.A NORMALstatus is always returned.
compute(double[]) - Method in class pulse.problem.schemes.rte.RadiativeTransferSolver: Launches a calculation of the radiative transfer equation.
CONDUCTIVITY - pulse.properties.NumericPropertyKeyword: Thermal conductivity.
configure(GeneralTask) - Method in class pulse.search.direction.ComplexPath: In addition to the superclass method, resets the Hessian to an Identity matrix.
configure(GeneralTask) - Method in class pulse.search.direction.GradientGuidedPath: Resets the Path: calculates the current gradient and the direction of search.Sets the minimum point to 0.0.
ConfirmAction - Interface in pulse.ui.components.controllers
conformTo(UpwardsNavigable) - Method in class pulse.tasks.Calculation
ConstrictionMover - Class in pulse.search.direction.pso
ConstrictionMover() - Constructor for class pulse.search.direction.pso.ConstrictionMover
contains(double) - Method in class pulse.math.Segment: Checks whether x is contained inside this Segment.
contains(NumericPropertyKeyword) - Method in class pulse.ui.components.models.ParameterTableModel
contains(NumericPropertyKeyword) - Method in class pulse.ui.components.models.SelectedKeysModel
contents(Group) - Static method in class pulse.util.Group: Recursively analyses all Group objects that are identified as subgroups to root (explicitly checks that subgroups exclude parents of root) and chooses those for which an Exporter exists.
convert(double[], double[]) - Static method in interface pulse.DiscreteInput
convert(List<Double>, List<Double>) - Static method in interface pulse.DiscreteInput
convert(List<Flag>) - Static method in class pulse.properties.Flag: A static method for converting enabled flags to a List of NumericPropertyKeywords.
copy() - Method in class pulse.baseline.Baseline
copy() - Method in class pulse.baseline.FlatBaseline
copy() - Method in class pulse.baseline.LinearBaseline
copy() - Method in class pulse.baseline.SinusoidalBaseline
copy() - Method in class pulse.math.Parameter
copy() - Method in class pulse.problem.laser.ExponentiallyModifiedGaussian
copy() - Method in class pulse.problem.laser.NumericPulse
copy() - Method in class pulse.problem.laser.PulseTemporalShape
copy() - Method in class pulse.problem.laser.RectangularPulse
copy() - Method in class pulse.problem.laser.TrapezoidalPulse
copy() - Method in class pulse.problem.schemes.DifferenceScheme: Creates a DifferenceScheme, which is an exact copy of this object.
copy() - Method in class pulse.problem.schemes.Grid: Creates a new Grid object with exactly the same parameters as this one.
copy() - Method in class pulse.problem.schemes.Grid2D
copy() - Method in class pulse.problem.schemes.solvers.ADILinearisedSolver
copy() - Method in class pulse.problem.schemes.solvers.ExplicitCoupledSolverNL
copy() - Method in class pulse.problem.schemes.solvers.ExplicitLinearisedSolver
copy() - Method in class pulse.problem.schemes.solvers.ExplicitNonlinearSolver
copy() - Method in class pulse.problem.schemes.solvers.ExplicitTranslucentSolver
copy() - Method in class pulse.problem.schemes.solvers.ImplicitCoupledSolverNL
copy() - Method in class pulse.problem.schemes.solvers.ImplicitDiathermicSolver
copy() - Method in class pulse.problem.schemes.solvers.ImplicitLinearisedSolver
copy() - Method in class pulse.problem.schemes.solvers.ImplicitNonlinearSolver
copy() - Method in class pulse.problem.schemes.solvers.ImplicitTranslucentSolver
copy() - Method in class pulse.problem.schemes.solvers.ImplicitTwoTemperatureSolver
copy() - Method in class pulse.problem.schemes.solvers.MixedCoupledSolverNL
copy() - Method in class pulse.problem.schemes.solvers.MixedLinearisedSolver
copy() - Method in class pulse.problem.statements.ClassicalProblem
copy() - Method in class pulse.problem.statements.ClassicalProblem2D
copy() - Method in class pulse.problem.statements.DiathermicMedium
copy() - Method in class pulse.problem.statements.model.AbsorptionModel
copy() - Method in class pulse.problem.statements.model.BeerLambertAbsorption
copy() - Method in class pulse.problem.statements.model.DiathermicProperties
copy() - Method in class pulse.problem.statements.model.ExtendedThermalProperties
copy() - Method in class pulse.problem.statements.model.Insulator
copy() - Method in class pulse.problem.statements.model.ThermalProperties
copy() - Method in class pulse.problem.statements.model.ThermoOpticalProperties
copy() - Method in class pulse.problem.statements.model.TwoTemperatureProperties
copy() - Method in class pulse.problem.statements.NonlinearProblem
copy() - Method in class pulse.problem.statements.ParticipatingMedium
copy() - Method in class pulse.problem.statements.PenetrationProblem
copy() - Method in class pulse.problem.statements.Problem
copy() - Method in class pulse.problem.statements.Pulse
copy() - Method in class pulse.problem.statements.Pulse2D
copy() - Method in class pulse.problem.statements.TwoTemperatureModel
copy() - Method in class pulse.search.statistics.AbsoluteDeviations
copy() - Method in class pulse.search.statistics.AICStatistic
copy() - Method in class pulse.search.statistics.BICStatistic
copy() - Method in class pulse.search.statistics.ModelSelectionCriterion
copy() - Method in class pulse.search.statistics.OptimiserStatistic
copy() - Method in class pulse.search.statistics.RangePenalisedLeastSquares
copy() - Method in class pulse.search.statistics.RegularisedLeastSquares
copy() - Method in class pulse.search.statistics.SumOfSquares
copyFrom(DifferenceScheme) - Method in class pulse.problem.schemes.DifferenceScheme: Copies the Grid and timeLimit from df.
copyToLastCalculation() - Method in class pulse.HeatingCurve
CornetteSchanksPF - Class in pulse.problem.schemes.rte.dom: The single-parameter Cornette-Schanks scattering phase function.
CornetteSchanksPF(ThermoOpticalProperties, Discretisation) - Constructor for class pulse.problem.schemes.rte.dom.CornetteSchanksPF
CORRELATION_THRESHOLD - pulse.properties.NumericPropertyKeyword: Threshold above which properties are thought to be strongly correlated.
CorrelationBuffer - Class in pulse.tasks.processing
CorrelationBuffer() - Constructor for class pulse.tasks.processing.CorrelationBuffer
CorrelationLogEntry - Class in pulse.tasks.logs
CorrelationLogEntry(SearchTask) - Constructor for class pulse.tasks.logs.CorrelationLogEntry
CorrelationTest - Class in pulse.search.statistics
CorrelationTest() - Constructor for class pulse.search.statistics.CorrelationTest
cosineTheta(int, int) - Method in class pulse.problem.schemes.rte.dom.PhaseFunction: Calculates the cosine of the scattering angle as the product of the two discrete cosine nodes.
CoupledImplicitScheme - Class in pulse.problem.schemes
CoupledImplicitScheme(NumericProperty, NumericProperty) - Constructor for class pulse.problem.schemes.CoupledImplicitScheme
CoupledImplicitScheme(NumericProperty, NumericProperty, NumericProperty) - Constructor for class pulse.problem.schemes.CoupledImplicitScheme
cp() - Method in class pulse.problem.statements.model.Gas
cpuUsage() - Method in class pulse.util.ResourceMonitor: This will calculate the CPU load for the machine running PULsE.
create() - Method in class pulse.search.direction.pso.SwarmState
createDefaultTableHeader() - Method in class pulse.ui.components.ResultTable
createIdentityMatrix(int) - Static method in class pulse.math.linear.Matrices: Creates an identity matrix with its dimension equal to the argument
createMatrix(double[][]) - Static method in class pulse.math.linear.Matrices: Creates a square matrix out of data.
createSquareMatrix(double[][]) - Static method in class pulse.math.linear.Matrices
CSV - pulse.io.export.Extension: The result will be a tab-delimited CSV document.
CurveEvent - Class in pulse.input.listeners: A CurveEvent is associated with an HeatingCurve object.
CurveEvent(CurveEventType) - Constructor for class pulse.input.listeners.CurveEvent: Constructs a CurveEvent object, combining the type and associated data
CurveEventType - Enum in pulse.input.listeners: An event type associated with an HeatingCurve object.
CurveExporter - Class in pulse.io.export: A singleton exporter allows writing the data contained in a AbstractData object in a two-column format to create files conforming to either csv or html extension.
CurveReader - Interface in pulse.io.readers: Basic interface for reading ExperimentalData (which extends HeatingCurve -- hence the name).
curveReaders() - Static method in class pulse.io.readers.ReaderManager: Finds all classes assignable from CurveReader within this package.
CUTOFF - Static variable in class pulse.problem.schemes.rte.exact.ExponentialIntegrals
CUTOFF_FACTOR - Static variable in class pulse.input.ExperimentalData: This is the cutoff factor which is used as a criterion for data truncation.

D

d0 - Variable in class pulse.problem.schemes.rte.dom.HermiteInterpolator
d1 - Variable in class pulse.problem.schemes.rte.dom.HermiteInterpolator
DAMPING_RATIO - pulse.properties.NumericPropertyKeyword: Levenberg-Marquardt damping ratio.
data() - Method in class pulse.input.Metadata: Creates a list of data that contain all NumericProperty objects belonging to this Metadata and an InstanceDescriptor relating to the pulse shape.
data() - Method in class pulse.ui.components.ResultTable
data() - Method in class pulse.util.PropertyHolder: Lists all data contained in this PropertyHolder.
DATA_LOADED - pulse.input.listeners.DataEventType: All data points loaded and are ready for processing.
DataCollectionListener - Interface in pulse.tasks.listeners
DataEvent - Class in pulse.input.listeners: A DataEvent is used to track changes happening with a ExperimentalData.
DataEvent(DataEventType, AbstractData) - Constructor for class pulse.input.listeners.DataEvent: Constructs a DataEvent object, combining the type and associated data
DataEventType - Enum in pulse.input.listeners: An event type that is associated with an ExperimentalData object.
DataFrame - Class in pulse.ui.frames
DataFrame(PropertyHolder, Component) - Constructor for class pulse.ui.frames.DataFrame: Create the frame.
DataListener - Interface in pulse.input.listeners: A listener interface, which is used to listen to DataEvents occurring with an ExperimentalData object.
DataLoader - Class in pulse.ui.components: Manages loading the experimental time-temperature profiles, metadata files and InterpolationDatasets.
DataLogEntry - Class in pulse.tasks.logs: A LogEntry with a list of NumericProperties.
DataLogEntry(SearchTask) - Constructor for class pulse.tasks.logs.DataLogEntry: Creates a new DataLogEntry based on the current values of the properties from task which match the currently selected LogFormat.
DatasetReader - Interface in pulse.io.readers: An AbstractReader for reading tabular datasets and enhancing them with an interpolation algorithm.
datasetReaders() - Static method in class pulse.io.readers.ReaderManager: Finds all classes assignable from DatasetReader within this package.
DATReader - Class in pulse.io.readers: A specific implementation of CurveReader used to read .dat files.
def(NumericPropertyKeyword) - Static method in class pulse.properties.NumericProperties: Searches for the default NumericProperty corresponding to keyword in the list of pre-defined properties loaded from the respective .xml file.
DEFAULT_BINS - Static variable in class pulse.math.filters.RunningAverage: The binning factor used to build a crude approximation of the heating curve.
DEFAULT_C - Static variable in class pulse.search.direction.pso.ConstrictionMover
DEFAULT_CHI - Static variable in class pulse.search.direction.pso.ConstrictionMover
DEFAULT_CHI - Static variable in class pulse.search.direction.pso.FIPSMover
DEFAULT_CLASSIC_PRECISION - Static variable in class pulse.problem.statements.AdiabaticSolution
DEFAULT_PHI - Static variable in class pulse.search.direction.pso.FIPSMover
DEFAULT_POINTS - Static variable in class pulse.problem.statements.AdiabaticSolution
DEFAULT_SET - Static variable in class pulse.problem.schemes.rte.dom.OrdinateSet
DEFAULT_TABLEAU - Static variable in class pulse.problem.schemes.rte.dom.ButcherTableau
defaultList() - Static method in class pulse.properties.NumericProperties
defaultScheme() - Method in class pulse.problem.statements.ClassicalProblem
defaultScheme() - Method in class pulse.problem.statements.ClassicalProblem2D
defaultScheme() - Method in class pulse.problem.statements.DiathermicMedium
defaultScheme() - Method in class pulse.problem.statements.NonlinearProblem
defaultScheme() - Method in class pulse.problem.statements.ParticipatingMedium
defaultScheme() - Method in class pulse.problem.statements.PenetrationProblem
defaultScheme() - Method in class pulse.problem.statements.Problem
defaultScheme() - Method in class pulse.problem.statements.TwoTemperatureModel
deleteSelected() - Method in class pulse.ui.components.ResultTable
density(double, double) - Method in class pulse.problem.statements.model.Gas
DENSITY - pulse.properties.NumericPropertyKeyword: Density of the sample.
DENSITY - pulse.ui.components.buttons.LoaderButton.DataType
derivableProperties() - Method in class pulse.tasks.TaskManager: Creates a list of property keywords that can be derived with help of the loaded data.
derivative(double) - Method in class pulse.math.LegendrePoly: Calculates the derivative of this Legendre polynomial.
derivative(double) - Method in class pulse.problem.schemes.rte.dom.HermiteInterpolator: Calculates the derivative of the interpolant at x
derivative(int, double, double[], double[], int, int) - Method in class pulse.problem.schemes.rte.dom.ODEIntegrator
derivative(int, int, double, double) - Method in class pulse.problem.schemes.rte.dom.ODEIntegrator
DerivativeCalculator - Interface in pulse.problem.schemes.rte: This is basically a coupling interface between a Solver and a RadiativeTransferSolver.
derive(boolean) - Method in class pulse.properties.Flag: Creates a new Flag object based on this Flag, but with a different value.
derive(NumericPropertyKeyword, Number) - Static method in class pulse.properties.NumericProperties: Searches for the default NumericProperty corresponding to keyword in the list of pre-defined properties loaded from the respective .xml file, and if found creates a new {
describe() - Method in class pulse.problem.schemes.rte.dom.ButcherTableau
describe() - Method in class pulse.problem.schemes.rte.dom.OrdinateSet
describe() - Method in class pulse.tasks.logs.AbstractLogger
describe() - Method in class pulse.tasks.SearchTask
describe() - Method in class pulse.tasks.TaskManager: This TaskManager will be described by the sample name for the experiment.
describe() - Method in class pulse.ui.components.ResultTable
describe() - Method in interface pulse.util.Descriptive: Creates a String 'describing' this object, usually for exporting purposes.
describe() - Method in class pulse.util.PropertyHolder
describe() - Method in class pulse.util.UpwardsNavigable: Uses the SearchTask id (if present) to describe this UpwardsNavigable.
Descriptive - Interface in pulse.util: Provides the describe() functionality.
DescriptorChangeListener - Interface in pulse.util
descriptors() - Method in class pulse.tasks.processing.ResultFormat: Creates a List<String> of default descriptions corresponding to the list of keywords specific to NumericProperty objects.
deserialize() - Static method in class pulse.util.Serializer
deserialize(File) - Static method in class pulse.util.Serializer
det() - Method in class pulse.math.linear.SquareMatrix: Calculates the determinant for an n-by-n square matrix.
Details - Enum in pulse.tasks.logs: An enum which lists different possible problems wit the SearchTask.
DETECTOR_GAIN - pulse.properties.NumericPropertyKeyword: The detector gain (amplification).
DETECTOR_IRIS - pulse.properties.NumericPropertyKeyword: The detector iris (aperture).
determineShotID(BufferedReader, File) - Static method in class pulse.io.readers.NetzschCSVReader
DIAMETER - pulse.properties.NumericPropertyKeyword: Sample diameter.
DIATHERMIC_COEFFICIENT - pulse.properties.NumericPropertyKeyword: A dimensionless coefficient in the radiation flux expression for the radiative heat transfer between the front and the rear (coated) surfaces.
DiathermicMedium - Class in pulse.problem.statements: The diathermic model is based on the following propositions: - A cylindrically shaped sample is completely transparent to thermal radiation; - The front~(laser-facing) and rear (detector-facing) sides of the sample are coated by a thin grey absorber; - The coatings are in perfect thermal contact with the bulk material; - The side surface is free from any coating.
DiathermicMedium() - Constructor for class pulse.problem.statements.DiathermicMedium
DiathermicMedium(Problem) - Constructor for class pulse.problem.statements.DiathermicMedium
DiathermicProperties - Class in pulse.problem.statements.model
DiathermicProperties() - Constructor for class pulse.problem.statements.model.DiathermicProperties
DiathermicProperties(ThermalProperties) - Constructor for class pulse.problem.statements.model.DiathermicProperties
DifferenceScheme - Class in pulse.problem.schemes: A DifferenceScheme is an abstract class that declares general methods for converting a Problem to a set of algebraic operations on a Grid.
DifferenceScheme() - Constructor for class pulse.problem.schemes.DifferenceScheme: A constructor which merely sets the time limit to its default value.
DifferenceScheme(NumericProperty) - Constructor for class pulse.problem.schemes.DifferenceScheme: A constructor for setting the time limit to a pre-set value.
DIFFUSIVITY - pulse.properties.NumericPropertyKeyword: The thermal diffusivity of the sample.
diffusivityRatio() - Method in class pulse.problem.statements.TwoTemperatureModel: Diffusivity of solid over diffusivity of gas
dimension() - Method in class pulse.math.linear.SquareMatrix
dimension() - Method in class pulse.math.linear.Vector: The dimension is simply the number of elements in a Vector
dimension() - Method in class pulse.math.ParameterVector
dimensionsMatch(RectangularMatrix) - Method in class pulse.math.linear.RectangularMatrix: Checks if the dimension of this Matrix and m match, i.e.
direction(GradientGuidedPath) - Method in interface pulse.search.direction.DirectionSolver: Finds the direction of the minimum using the previously calculated values stored in p.
direction(GradientGuidedPath) - Method in interface pulse.search.direction.HessianDirectionSolver: Uses an approximation of the Hessian matrix, containing the information on second derivatives, calculated with the BFGS formula in combination with the local value of the gradient to evaluate the direction of the minimum on p.
DirectionSolver - Interface in pulse.search.direction
DiscreteInput - Interface in pulse
DiscreteOrdinatesMethod - Class in pulse.problem.schemes.rte.dom: A class that manages the solution of the radiative transfer equation using the discrete ordinates method.
DiscreteOrdinatesMethod(ParticipatingMedium, Grid) - Constructor for class pulse.problem.schemes.rte.dom.DiscreteOrdinatesMethod: Constructs a discrete ordinates solver using the parameters (emissivity, scattering albedo and optical thickness) declared by the problem object.
DiscretePulse - Class in pulse.problem.laser: A DiscretePulse is an object that acts as a medium between the physical Pulse and the respective DifferenceScheme used to process the solution of a Problem.
DiscretePulse(Problem, Grid) - Constructor for class pulse.problem.laser.DiscretePulse: This creates a one-dimensional discrete pulse on a grid.
DiscretePulse2D - Class in pulse.problem.laser: The discrete pulse on a Grid2D.
DiscretePulse2D(ClassicalProblem2D, Grid2D) - Constructor for class pulse.problem.laser.DiscretePulse2D: The constructor for DiscretePulse2D.
discretePulseOn(Grid) - Method in class pulse.problem.statements.ClassicalProblem2D
discretePulseOn(Grid) - Method in class pulse.problem.statements.Problem: Constructs a DiscretePulse on the specified grid using the Pulse corresponding to this Problem.
DiscreteQuantities - Class in pulse.problem.schemes.rte.dom: Defines the main quantities calculated within the discrete ordinates method.
DiscreteQuantities(int, int) - Constructor for class pulse.problem.schemes.rte.dom.DiscreteQuantities: Constructs a set of quantities based on the specified spatial and angular discretisation.
DiscreteSelector<T extends Descriptive> - Class in pulse.util
DiscreteSelector(AbstractReader<T>, String, String) - Constructor for class pulse.util.DiscreteSelector
Discretisation - Class in pulse.problem.schemes.rte.dom: A class specifying the discretisation (both spatial and angular) scheme used to solve the radiative transfer equation with the discrete ordinates method.
Discretisation(ThermoOpticalProperties) - Constructor for class pulse.problem.schemes.rte.dom.Discretisation: Constructs a DiscreteIntensities with the default OrdinateSet and a new uniform grid.
dispose() - Method in class pulse.ui.frames.DataFrame
distanceToSq(Vector) - Method in class pulse.math.linear.Vector: Calculates the squared distance from this Vector to v (which is the squared length of the connecting Vector).
DistributedDetection - Class in pulse.problem.schemes: An interface providing the ability to calculate the integral signal out from a finite-depth material layer.
DistributedDetection() - Constructor for class pulse.problem.schemes.DistributedDetection
doFit(List<Double>, List<Double>) - Method in class pulse.baseline.Baseline: Calculates the baseline parameters based on input arguments.
doFit(List<Double>, List<Double>) - Method in class pulse.baseline.FlatBaseline
doFit(List<Double>, List<Double>) - Method in class pulse.baseline.LinearBaseline
doInterpolation() - Method in class pulse.input.InterpolationDataset: Constructs a new Akima spline interpolator and uses the available dataset to produce a SplineInterpolation.
doIterations(double[], double, int) - Method in interface pulse.problem.schemes.FixedPointIterations: Performs iterations until the convergence criterion is satisfied.The latter consists in having a difference two consequent iterations of V less than the specified error.
doIterations(AdaptiveIntegrator) - Method in class pulse.problem.schemes.rte.dom.FixedIterations
doIterations(AdaptiveIntegrator) - Method in class pulse.problem.schemes.rte.dom.IterativeSolver: De-facto solves the radiative transfer problem iteratively.
doIterations(AdaptiveIntegrator) - Method in class pulse.problem.schemes.rte.dom.SuccessiveOverrelaxation
DOM_DIRECTIONS - pulse.properties.NumericPropertyKeyword: Number of independent directions (DOM).
DOM_GRID_DENSITY - pulse.properties.NumericPropertyKeyword: Internal DOM grid density (RTE).
DOM_ITERATION_ERROR - pulse.properties.NumericPropertyKeyword: Iteration error tolerance in DOM calculations.
domain() - Method in class pulse.problem.schemes.CoupledImplicitScheme
domain() - Method in class pulse.problem.schemes.DifferenceScheme: Retrieves all problem statements that can be solved with this implementation of the difference scheme.
domain() - Method in class pulse.problem.schemes.solvers.ADILinearisedSolver
domain() - Method in class pulse.problem.schemes.solvers.ExplicitCoupledSolver
domain() - Method in class pulse.problem.schemes.solvers.ExplicitLinearisedSolver
domain() - Method in class pulse.problem.schemes.solvers.ExplicitNonlinearSolver
domain() - Method in class pulse.problem.schemes.solvers.ExplicitTranslucentSolver
domain() - Method in class pulse.problem.schemes.solvers.ImplicitDiathermicSolver
domain() - Method in class pulse.problem.schemes.solvers.ImplicitLinearisedSolver
domain() - Method in class pulse.problem.schemes.solvers.ImplicitNonlinearSolver
domain() - Method in class pulse.problem.schemes.solvers.ImplicitTranslucentSolver
domain() - Method in class pulse.problem.schemes.solvers.ImplicitTwoTemperatureSolver
domain() - Method in class pulse.problem.schemes.solvers.MixedLinearisedSolver
domain(ParameterVector, Vector) - Static method in class pulse.search.linear.LinearOptimiser: Sets the domain for this linear search on p.
DONE - pulse.tasks.logs.Status: Task successfully finished.
dot(Vector) - Method in class pulse.math.linear.Vector: Calculates the scalar product of this and v.
DoubleTablePanel - Class in pulse.ui.components.panels
DoubleTablePanel(JTable, String, JTable, String) - Constructor for class pulse.ui.components.panels.DoubleTablePanel
dx(NumericProperty, double) - Method in class pulse.search.direction.GradientBasedOptimiser: Calculates the gradient step.
dye(BufferedImage, Color) - Static method in class pulse.util.ImageUtils: Credit to Marco13 (https://stackoverflow.com/questions/21382966/colorize-a-picture-in-java)
dye(ImageIcon, Color) - Static method in class pulse.util.ImageUtils: Credit to Werner Kvalem Vesterås (https://stackoverflow.com/questions/15053214/converting-an-imageicon-to-a-bufferedimage)

E

elements - Variable in class pulse.ui.components.models.ParameterTableModel
emission(double) - Method in class pulse.problem.schemes.rte.dom.ODEIntegrator
emissivePower(double) - Method in class pulse.problem.schemes.rte.BlackbodySpectrum: Calculates the emissive power.
EMISSIVITY - pulse.properties.NumericPropertyKeyword: Emissivity of the sample (nonlinear problems).
EmptyCorrelationTest - Class in pulse.search.statistics
EmptyCorrelationTest() - Constructor for class pulse.search.statistics.EmptyCorrelationTest
EmptyTest - Class in pulse.search.statistics
EmptyTest() - Constructor for class pulse.search.statistics.EmptyTest
EPS - Static variable in class pulse.search.direction.CompositePathOptimiser: For numerical comparison.
equals(Object) - Method in class pulse.AbstractData
equals(Object) - Method in class pulse.HeatingCurve
equals(Object) - Method in class pulse.input.ExperimentalData
equals(Object) - Method in class pulse.input.Metadata
equals(Object) - Method in class pulse.math.Harmonic
equals(Object) - Method in class pulse.math.linear.RectangularMatrix: Checks whether o is a SquareMatrix with matching dimensions and all elements of which are (approximately) equal to the respective elements of this matrix}.
equals(Object) - Method in class pulse.math.linear.Vector: Checks if o is logically equivalent to an instance of this class.
equals(Object) - Method in class pulse.math.ParameterIdentifier
equals(Object) - Method in class pulse.properties.Flag
equals(Object) - Method in class pulse.properties.NumericProperty: The Object o is considered to be equal to this NumericProperty if (a) it is of the same class; (b) its value is the same as for this NumericProperty, and (c) if it is specified by the same NumericPropertyKeyword.
equals(Object) - Method in class pulse.properties.SampleName
equals(Object) - Method in class pulse.search.statistics.ModelSelectionCriterion
equals(Object) - Method in class pulse.search.statistics.ResidualStatistic
equals(Object) - Method in class pulse.tasks.Calculation
equals(Object) - Method in class pulse.tasks.processing.AbstractResult
equals(Object) - Method in class pulse.tasks.processing.ResultFormat
equals(Object) - Method in class pulse.tasks.SearchTask: A SearchTask is deemed equal to another one if it has the same ExperimentalData.
equals(Object) - Method in class pulse.util.ImmutablePair
equals(Object) - Method in class pulse.util.InstanceDescriptor
EQUALS_TOLERANCE - Static variable in class pulse.math.MathUtils
ERROR_TOLERANCE - pulse.properties.NumericPropertyKeyword: The total error tolerance.
errorInCurrentUnits() - Method in class pulse.properties.NumericProperty
estimateSignalRange(ExperimentalData) - Method in class pulse.problem.statements.Problem: The signal range is defined as $max{$ T(t) } - min{ T(t) }, where $max{...}$ and $min{...}$ are robust to outliers.
evalPulseSpot() - Method in class pulse.problem.laser.DiscretePulse2D: Calculates the discretePulseSpot using the gridRadialDistance method.
evalRightBoundary(double, double) - Method in class pulse.problem.schemes.ImplicitScheme
evalRightBoundary(double, double) - Method in class pulse.problem.schemes.solvers.ImplicitCoupledSolver
evalRightBoundary(double, double) - Method in class pulse.problem.schemes.solvers.ImplicitDiathermicSolver
evalRightBoundary(double, double) - Method in class pulse.problem.schemes.solvers.ImplicitLinearisedSolver
evalRightBoundary(double, double) - Method in class pulse.problem.schemes.solvers.ImplicitNonlinearSolver
evalRightBoundary(double, double) - Method in class pulse.problem.schemes.solvers.ImplicitTranslucentSolver
evalRightBoundary(double, double) - Method in class pulse.problem.schemes.solvers.ImplicitTwoTemperatureSolver
evalRightBoundary(double, double) - Method in class pulse.problem.schemes.solvers.MixedCoupledSolver
evalRightBoundary(double, double) - Method in class pulse.problem.schemes.solvers.MixedLinearisedSolver
evaluate() - Method in class pulse.tasks.TaskManager
evaluate(double) - Method in class pulse.math.filters.PolylineOptimiser.PolylineResponse
evaluate(double) - Method in class pulse.math.FunctionWithInterpolation: Performs the calculation at t.
evaluate(double) - Method in class pulse.problem.statements.model.Gas
evaluate(double) - Method in interface pulse.Response
evaluate(double) - Method in class pulse.tasks.Calculation
evaluate(double[], double[]) - Method in class pulse.search.statistics.CorrelationTest
evaluate(double[], double[]) - Method in class pulse.search.statistics.EmptyCorrelationTest
evaluate(double[], double[]) - Method in class pulse.search.statistics.PearsonCorrelation
evaluate(double[], double[]) - Method in class pulse.search.statistics.SpearmansCorrelationTest
evaluate(double, double) - Method in class pulse.problem.statements.model.Gas
evaluate(int, int) - Method in interface pulse.math.Window
evaluate(String) - Static method in class pulse.io.readers.ExpressionParser
evaluate(GeneralTask) - Method in class pulse.search.direction.pso.Particle
evaluate(GeneralTask) - Method in class pulse.search.direction.pso.SwarmState
evaluate(GeneralTask) - Method in class pulse.search.statistics.AbsoluteDeviations: Calculates the L1 norm statistic, which simply sums up the absolute values of residuals.
evaluate(GeneralTask) - Method in class pulse.search.statistics.AndersonDarlingTest
evaluate(GeneralTask) - Method in class pulse.search.statistics.EmptyTest
evaluate(GeneralTask) - Method in class pulse.search.statistics.KSTest
evaluate(GeneralTask) - Method in class pulse.search.statistics.ModelSelectionCriterion
evaluate(GeneralTask) - Method in class pulse.search.statistics.RangePenalisedLeastSquares
evaluate(GeneralTask) - Method in class pulse.search.statistics.RegularisedLeastSquares
evaluate(GeneralTask) - Method in class pulse.search.statistics.RSquaredTest: Calculates the coefficient of determination, or simply the $R^{2}$ value.
evaluate(GeneralTask) - Method in class pulse.search.statistics.Statistic
evaluate(GeneralTask) - Method in class pulse.search.statistics.SumOfSquares: Calculates the sum of squared deviations using curve as reference.
evaluate(CorrelationTest) - Method in class pulse.tasks.processing.CorrelationBuffer
evaluate(Calculation, Calculation) - Static method in class pulse.search.statistics.FTest: Evaluates the F-statistic for two calculations.
evaluateAlpha() - Method in class pulse.problem.schemes.TridiagonalMatrixAlgorithm: Calculates the alpha coefficients as part of the tridiagonal matrix algorithm.
evaluateAt(double) - Method in class pulse.problem.laser.ExponentiallyModifiedGaussian: Evaluates the laser power function.
evaluateAt(double) - Method in class pulse.problem.laser.NumericPulse: If the argument is less than the pulse width, uses a spline to interpolate the pulse data at time.
evaluateAt(double) - Method in class pulse.problem.laser.PulseTemporalShape: This evaluates the dimensionless, discretised pulse function on a grid needed to evaluate the heat source in the difference scheme.
evaluateAt(double) - Method in class pulse.problem.laser.RectangularPulse
evaluateAt(double) - Method in class pulse.problem.laser.TrapezoidalPulse: Calculates power using a piecewise function, which corresponds to either a linearly changing, a constant laser power or zero.
evaluateAt(double, double) - Method in class pulse.problem.laser.DiscretePulse2D: This calculates the dimensionless, discretised pulse function at a dimensionless radial coordinate coord.
evaluateBeta(double[]) - Method in class pulse.problem.schemes.BlockMatrixAlgorithm
evaluateBeta(double[]) - Method in class pulse.problem.schemes.TridiagonalMatrixAlgorithm
evaluateBeta(double[], int, int) - Method in class pulse.problem.schemes.BlockMatrixAlgorithm
evaluateBeta(double[], int, int) - Method in class pulse.problem.schemes.TridiagonalMatrixAlgorithm: Calculates the beta coefficients as part of the tridiagonal matrix algorithm.
evaluateSignal(AbsorptionModel, Grid, double[]) - Static method in class pulse.problem.schemes.DistributedDetection: Calculates the effective signal registered by the detector, which takes into account a distributed emission pattern.
excludePair(NumericPropertyKeyword, NumericPropertyKeyword) - Static method in class pulse.tasks.processing.CorrelationBuffer
excludePair(ImmutablePair<NumericPropertyKeyword>) - Static method in class pulse.tasks.processing.CorrelationBuffer
excludeSingle(NumericPropertyKeyword) - Static method in class pulse.tasks.processing.CorrelationBuffer
execute(SearchTask) - Method in class pulse.tasks.TaskManager: Executes t asynchronously using a CompletableFuture.
EXECUTE - pulse.ui.components.buttons.ExecutionButton.ExecutionState
executeAll() - Method in class pulse.tasks.TaskManager: Creates a queue of SearchTasks based on their readiness and feeds that queue to a ForkJoinPool using a parallel stream.
EXECUTION_ERROR - pulse.tasks.logs.Status: An error has occurred during execution.
ExecutionButton - Class in pulse.ui.components.buttons
ExecutionButton() - Constructor for class pulse.ui.components.buttons.ExecutionButton
ExecutionButton.ExecutionState - Enum in pulse.ui.components.buttons
ExitRequestListener - Interface in pulse.ui.components.listeners
ExperimentalData - Class in pulse.input: An ExperimentalData object is essentially a AbstractData with adjustable range and linked Metadata.
ExperimentalData() - Constructor for class pulse.input.ExperimentalData: Constructs an ExperimentalData object using the superclass constructor and creating a new list of data listeners.
ExplicitCoupledSolver - Class in pulse.problem.schemes.solvers
ExplicitCoupledSolver() - Constructor for class pulse.problem.schemes.solvers.ExplicitCoupledSolver
ExplicitCoupledSolver(NumericProperty, NumericProperty) - Constructor for class pulse.problem.schemes.solvers.ExplicitCoupledSolver
ExplicitCoupledSolverNL - Class in pulse.problem.schemes.solvers
ExplicitCoupledSolverNL() - Constructor for class pulse.problem.schemes.solvers.ExplicitCoupledSolverNL
ExplicitCoupledSolverNL(NumericProperty, NumericProperty) - Constructor for class pulse.problem.schemes.solvers.ExplicitCoupledSolverNL
ExplicitLinearisedSolver - Class in pulse.problem.schemes.solvers: Performs a fully-dimensionless calculation for the LinearisedProblem.
ExplicitLinearisedSolver() - Constructor for class pulse.problem.schemes.solvers.ExplicitLinearisedSolver
ExplicitLinearisedSolver(NumericProperty, NumericProperty) - Constructor for class pulse.problem.schemes.solvers.ExplicitLinearisedSolver
ExplicitLinearisedSolver(NumericProperty, NumericProperty, NumericProperty) - Constructor for class pulse.problem.schemes.solvers.ExplicitLinearisedSolver
ExplicitNonlinearSolver - Class in pulse.problem.schemes.solvers
ExplicitNonlinearSolver() - Constructor for class pulse.problem.schemes.solvers.ExplicitNonlinearSolver
ExplicitNonlinearSolver(NumericProperty, NumericProperty) - Constructor for class pulse.problem.schemes.solvers.ExplicitNonlinearSolver
ExplicitNonlinearSolver(NumericProperty, NumericProperty, NumericProperty) - Constructor for class pulse.problem.schemes.solvers.ExplicitNonlinearSolver
ExplicitRungeKutta - Class in pulse.problem.schemes.rte.dom: Explicit Runge-Kutta integrator with Hermite interpolation for the solution of one-dimensional radiative transfer problems.
ExplicitRungeKutta(Discretisation) - Constructor for class pulse.problem.schemes.rte.dom.ExplicitRungeKutta
ExplicitScheme - Class in pulse.problem.schemes: This class provides the necessary framework to enable a simple explicit finite-difference scheme (also called the forward-time centred space scheme) for solving the one-dimensional heat conduction problem.
ExplicitScheme() - Constructor for class pulse.problem.schemes.ExplicitScheme: Constructs a default explicit scheme using the default values of GRID_DENSITY and TAU_FACTOR.
ExplicitScheme(NumericProperty, NumericProperty) - Constructor for class pulse.problem.schemes.ExplicitScheme: Constructs an explicit scheme on a one-dimensional grid that is specified by the values N and timeFactor.
ExplicitScheme(NumericProperty, NumericProperty, NumericProperty) - Constructor for class pulse.problem.schemes.ExplicitScheme: Constructs an explicit scheme on a one-dimensional grid that is specified by the values N and timeFactor.
explicitSolution() - Method in class pulse.problem.schemes.ExplicitScheme: Uses the explicit finite-difference representation of the heat equation to calculate the grid-function everywhere except for the boundaries.
explicitSolution() - Method in class pulse.problem.schemes.solvers.ExplicitCoupledSolver
ExplicitTranslucentSolver - Class in pulse.problem.schemes.solvers
ExplicitTranslucentSolver() - Constructor for class pulse.problem.schemes.solvers.ExplicitTranslucentSolver
ExplicitTranslucentSolver(NumericProperty, NumericProperty, NumericProperty) - Constructor for class pulse.problem.schemes.solvers.ExplicitTranslucentSolver
ExponentialIntegrals - Class in pulse.problem.schemes.rte.exact: A factory class for creating and evaluating ExponentialIntegrals of orders from 1 to 4.
ExponentiallyModifiedGaussian - Class in pulse.problem.laser: Represents the exponentially modified Gaussian function, which is given by three independent parameters (μ, σ and λ).
ExponentiallyModifiedGaussian() - Constructor for class pulse.problem.laser.ExponentiallyModifiedGaussian: Creates an exponentially modified Gaussian with the default parameter values.
ExponentiallyModifiedGaussian(ExponentiallyModifiedGaussian) - Constructor for class pulse.problem.laser.ExponentiallyModifiedGaussian
export(Metadata, File, Extension) - Method in class pulse.io.export.MetadataExporter: Ignores metadata whose external IDs are negative, otherwise calls the superclass method.
export(T, File, Extension) - Method in interface pulse.io.export.Exporter: Exports the available contents to directory without asking a confirmation from the user.
export(T, File, Extension) - Static method in class pulse.io.export.ExportManager: Attempts to export the given target to the directory by saving the contents in a file with the given Extension.
exportAllResults(File, Extension) - Static method in class pulse.io.export.ExportManager: Exports all results generated previously during task execution for all tasks listed by the TaskManager, provided those tasks had the respective result assigned to them.
exportAllTasks(File, Extension) - Static method in class pulse.io.export.ExportManager: This will invoke exportGroup on each task listed by the TaskManager.
exportCurrentTask(File) - Static method in class pulse.io.export.ExportManager: Exports the currently selected task as a group of objects using the default export extension.
exportCurrentTask(File, Extension) - Static method in class pulse.io.export.ExportManager: Exports the currently selected task as a group of objects.
ExportDialog - Class in pulse.ui.frames.dialogs
ExportDialog() - Constructor for class pulse.ui.frames.dialogs.ExportDialog
Exporter<T extends Descriptive> - Interface in pulse.io.export: An Exporter defines a set of rules to enable exporting of a certain type of PULsE objects (typically, instances of the PropertyHolder class).
exportGroup(Group, File, Extension) - Static method in class pulse.io.export.ExportManager: Fully exports group and all its contents to the root directory requesting the files to be saved with the extension.
ExportManager - Class in pulse.io.export: Manages export operations.
ExpressionParser - Class in pulse.io.readers: Original source: https://stackoverflow.com/questions/3422673/how-to-evaluate-a-math-expression-given-in-string-form#3423360
ExtendedThermalProperties - Class in pulse.problem.statements.model
ExtendedThermalProperties() - Constructor for class pulse.problem.statements.model.ExtendedThermalProperties
ExtendedThermalProperties(ExtendedThermalProperties) - Constructor for class pulse.problem.statements.model.ExtendedThermalProperties
ExtendedThermalProperties(ThermalProperties) - Constructor for class pulse.problem.statements.model.ExtendedThermalProperties
extendedTo(ExperimentalData, Baseline) - Method in class pulse.HeatingCurve: This creates a new HeatingCurve to match the time boundaries of the data.
Extension - Enum in pulse.io.export: Describes the available extensions for the exported files.
extensionsMatch(File, String) - Static method in interface pulse.io.readers.AbstractHandler: Checks if the file suffix for file matches the extension.
ExternalDatasetListener - Interface in pulse.input.listeners: A listener associated with the InterpolationDataset static repository of interpolations.
ExternalGraphFrame<T> - Class in pulse.ui.frames
ExternalGraphFrame(String, AuxPlotter<T>, int, int) - Constructor for class pulse.ui.frames.ExternalGraphFrame
externalIdentifier(int) - Static method in class pulse.tasks.Identifier
extract(ThermoOpticalProperties) - Method in class pulse.problem.schemes.rte.dom.ODEIntegrator

F

FAIL_SAFE_FACTOR - Static variable in class pulse.math.filters.HalfTimeCalculator: A fail-safe factor.
FAILED - pulse.tasks.logs.Status: Task has finished without errors, however failing to meet a statistical criterion.
FALSE_REJECTION_PROBABILITY - Static variable in class pulse.search.statistics.FTest: False-rejection probability for the F-test, equal to 0.05
fastAbs(double) - Static method in class pulse.math.MathUtils: A fast bitwise calculation of the absolute value.
fastExp(double) - Static method in class pulse.math.MathUtils: Approximate calculation of exp(val).
fastLog(double) - Static method in class pulse.math.MathUtils: A highly-approximate calculation of ln(val).
fastPowGeneral(double, double) - Static method in class pulse.math.MathUtils: Approximate calculation of a^b.
fastPowInt(long, int) - Static method in class pulse.math.MathUtils: Rapid exponentiation where the base and the exponent are integer value.
fastPowLoop(double, int) - Static method in class pulse.math.MathUtils: Rapid calculation of b-th power of a, which is simply a repeated multiplication, in case of positive b, or a repeated division.
fastPowSgn(int) - Static method in class pulse.math.MathUtils: Rapid calculation of (-1)ⁿ using a ternary conditional operator.
fastTanh(double) - Static method in class pulse.math.MathUtils: A method for the approximate calculation of the hyperbolic tangent.
FFTTransformer - Class in pulse.math
FFTTransformer(double[]) - Constructor for class pulse.math.FFTTransformer
FFTTransformer(Window, double[]) - Constructor for class pulse.math.FFTTransformer
FFTTransformer(Window, double[], double[]) - Constructor for class pulse.math.FFTTransformer
fill(GeneralTask, int) - Method in class pulse.tasks.processing.Buffer: (Over)writes a buffer cell corresponding to the bufferElement with the current set of parameters of SearchTask and the search statistic.
filter(DiscreteInput) - Method in class pulse.input.Range: Contains a data double array ([0] - x, [1] - y), where the data points have been filtered so that each x fits into this range.
Filter - Interface in pulse.math.filters
filterProperties(AbstractResult) - Static method in class pulse.tasks.processing.AbstractResult: A static method for filtering the properties contained in the result to choose only those that conform to its format.
filterProperties(AbstractResult, ResultFormat) - Static method in class pulse.tasks.processing.AbstractResult: A static method for filtering the properties contained in the result to choose only those that conform to the format.
finaliseIteration(double[]) - Method in interface pulse.problem.schemes.FixedPointIterations: Finalises the current iteration.By default, does nothing.
finaliseIteration(double[]) - Method in class pulse.problem.schemes.solvers.ExplicitCoupledSolverNL
finaliseIteration(double[]) - Method in class pulse.problem.schemes.solvers.ImplicitCoupledSolverNL
finaliseIteration(double[]) - Method in class pulse.problem.schemes.solvers.MixedCoupledSolverNL
finaliseStep() - Method in class pulse.problem.schemes.CoupledImplicitScheme
finaliseStep() - Method in class pulse.problem.schemes.DifferenceScheme
finaliseStep() - Method in class pulse.problem.schemes.OneDimensionalScheme: Overwrites previously calculated temperature values with the calculations made at the current time step
finaliseStep() - Method in class pulse.problem.schemes.solvers.ADILinearisedSolver
finaliseStep() - Method in class pulse.problem.schemes.solvers.ExplicitCoupledSolver
finalize() - Method in class pulse.ui.Launcher
find(String) - Method in class pulse.util.DiscreteSelector
findAny(String) - Static method in enum pulse.properties.NumericPropertyKeyword
findBestCalculation() - Method in class pulse.tasks.SearchTask: Finds the best calculation by comparing those already stored by their model selection statistics.
findCurveReaders(String) - Static method in class pulse.io.readers.ReaderManager: Finds all classes assignable from CurveReader within the pckgname package.
findDatasetReaders(String) - Static method in class pulse.io.readers.ReaderManager: Finds all classes assignable from DatasetReader within the pckgname package.
findExporter(Class<T>) - Static method in class pulse.io.export.ExportManager: Finds an exporter that can work with target.
findExporter(T) - Static method in class pulse.io.export.ExportManager: Finds a suitable exporter for a non-null target by calling findExporter(target.getClass()).
findLineByLabel(BufferedReader, String, boolean) - Static method in class pulse.io.readers.NetzschCSVReader
findLineByLabel(BufferedReader, String, String, boolean) - Static method in class pulse.io.readers.NetzschCSVReader
findMalformedElements() - Method in class pulse.math.ParameterVector: Finds any elements of this vector which do not pass sanity checks.
findMalformedProperties() - Method in class pulse.problem.statements.model.ThermalProperties
findNested(Calculation, Calculation) - Static method in class pulse.search.statistics.FTest: Tests two models to see which one is nested in the other.
findPulseReaders(String) - Static method in class pulse.io.readers.ReaderManager
FINITE_DIFFERENCE_ERROR - pulse.problem.schemes.solvers.SolverException.SolverExceptionType
FIPSMover - Class in pulse.search.direction.pso
FIPSMover() - Constructor for class pulse.search.direction.pso.FIPSMover
fireDataChanged(DataEvent) - Method in class pulse.input.ExperimentalData
fireDescriptorChange() - Method in class pulse.util.DiscreteSelector
firePropertyChanged(Object, Property) - Method in class pulse.util.PropertyHolder
fireStatusUpdate(RTECalculationStatus) - Method in class pulse.problem.schemes.rte.RadiativeTransferSolver
fireTaskSelected(Object) - Method in class pulse.tasks.TaskManager
firstBeta() - Method in class pulse.problem.schemes.ImplicitScheme
firstBeta() - Method in class pulse.problem.schemes.solvers.ImplicitCoupledSolver
firstBeta() - Method in class pulse.problem.schemes.solvers.ImplicitDiathermicSolver
firstBeta() - Method in class pulse.problem.schemes.solvers.ImplicitLinearisedSolver
firstBeta() - Method in class pulse.problem.schemes.solvers.ImplicitNonlinearSolver
firstBeta() - Method in class pulse.problem.schemes.solvers.ImplicitTranslucentSolver
firstBeta() - Method in class pulse.problem.schemes.solvers.ImplicitTwoTemperatureSolver
firstBeta() - Method in class pulse.problem.schemes.solvers.MixedCoupledSolver
firstBeta() - Method in class pulse.problem.schemes.solvers.MixedLinearisedSolver
firstMoment(double[][], int) - Method in class pulse.problem.schemes.rte.dom.Discretisation: Calculates the first moment $∑$ _iw_iμ_iext_ij, which can be applied e.g.
fitTo(List<Double>, List<Double>) - Method in class pulse.baseline.Baseline
fitTo(DiscreteInput) - Method in class pulse.baseline.Baseline: Calls fitTo using the default time range for the data: -Infinity < t < ZERO_LEFT, where the upper bound is a small negative constant.
fitTo(DiscreteInput) - Method in class pulse.baseline.SinusoidalBaseline
FixedIntervalIntegrator - Class in pulse.math: A fixed-interval integrator implements a numerical scheme in which the domain within the integration bounds is divided into equal intervals of a sufficiently small (and fixed) length.
FixedIntervalIntegrator(Segment) - Constructor for class pulse.math.FixedIntervalIntegrator: Creates a FixedIntervalIntegrator with the specified integration bounds and a default number of integration segments.
FixedIntervalIntegrator(Segment, NumericProperty) - Constructor for class pulse.math.FixedIntervalIntegrator: Creates a FixedIntervalIntegrator with the specified integration bounds number of integration segments.
FixedIterations - Class in pulse.problem.schemes.rte.dom
FixedIterations() - Constructor for class pulse.problem.schemes.rte.dom.FixedIterations
FixedPointIterations - Interface in pulse.problem.schemes
Flag - Class in pulse.properties: A Flag is a Property that has a type represented by a NumericPropertyKeyword, a boolean value, and a String with a short abbreviation describing the type of this flag (this is usually defined by the corresponding NumericProperty).
Flag(Flag) - Constructor for class pulse.properties.Flag
Flag(NumericPropertyKeyword) - Constructor for class pulse.properties.Flag: Creates a Flag with the type type.
Flag(NumericPropertyKeyword, boolean) - Constructor for class pulse.properties.Flag
Flag(NumericProperty, boolean) - Constructor for class pulse.properties.Flag: Creates a Flag with the following pre-specified parameters: type type, short description abbreviations, and value.
FLAT_TOP - Static variable in interface pulse.math.Window
FlatBaseline - Class in pulse.baseline: A flat baseline.
FlatBaseline() - Constructor for class pulse.baseline.FlatBaseline: A primitive constructor, which initialises a CONSTANT baseline with zero intercept and slope.
FlatBaseline(double) - Constructor for class pulse.baseline.FlatBaseline: Creates a flat baseline equal to the argument.
flux(int) - Method in class pulse.problem.schemes.rte.dom.Discretisation: Calculates the net flux at j.
flux(int) - Method in class pulse.problem.schemes.rte.exact.NonscatteringRadiativeTransfer
flux(int, int, int) - Method in class pulse.problem.schemes.rte.dom.Discretisation: Calculates the partial flux by performing a simple summation bounded by the arguments.
fluxDerivative(int) - Method in interface pulse.problem.schemes.rte.DerivativeCalculator: Calculates the flux derivative at the uIndex grid point.
fluxDerivative(int) - Method in class pulse.problem.schemes.rte.FluxesAndExplicitDerivatives
fluxDerivative(int) - Method in class pulse.problem.schemes.rte.FluxesAndImplicitDerivatives
fluxDerivativeFront() - Method in interface pulse.problem.schemes.rte.DerivativeCalculator: Calculates the flux derivative at the front surface.
fluxDerivativeFront() - Method in class pulse.problem.schemes.rte.FluxesAndExplicitDerivatives
fluxDerivativeFront() - Method in class pulse.problem.schemes.rte.FluxesAndImplicitDerivatives
fluxDerivativeRear() - Method in interface pulse.problem.schemes.rte.DerivativeCalculator: Calculates the flux derivative at the rear surface.
fluxDerivativeRear() - Method in class pulse.problem.schemes.rte.FluxesAndExplicitDerivatives
fluxDerivativeRear() - Method in class pulse.problem.schemes.rte.FluxesAndImplicitDerivatives
fluxes() - Method in class pulse.problem.schemes.rte.exact.NonscatteringRadiativeTransfer: Calculates the radiative fluxes on the grid specified in the constructor arguments.
Fluxes - Class in pulse.problem.schemes.rte
Fluxes(NumericProperty, NumericProperty) - Constructor for class pulse.problem.schemes.rte.Fluxes
FluxesAndExplicitDerivatives - Class in pulse.problem.schemes.rte
FluxesAndExplicitDerivatives(NumericProperty, NumericProperty) - Constructor for class pulse.problem.schemes.rte.FluxesAndExplicitDerivatives
FluxesAndImplicitDerivatives - Class in pulse.problem.schemes.rte
FluxesAndImplicitDerivatives(NumericProperty, NumericProperty) - Constructor for class pulse.problem.schemes.rte.FluxesAndImplicitDerivatives
fluxLeft(BlackbodySpectrum) - Method in class pulse.problem.schemes.rte.dom.Discretisation: Calculates the flux at the left boundary using an alternative formula.
fluxRight(BlackbodySpectrum) - Method in class pulse.problem.schemes.rte.dom.Discretisation: Calculates the flux at the right boundary using an alternative formula.
format(double, StringBuffer, FieldPosition) - Method in class pulse.properties.ScientificFormat
format(long, StringBuffer, FieldPosition) - Method in class pulse.properties.ScientificFormat
FormattedInputDialog - Class in pulse.ui.frames.dialogs
FormattedInputDialog(NumericProperty) - Constructor for class pulse.ui.frames.dialogs.FormattedInputDialog
formattedOutput() - Method in class pulse.properties.NumericProperty: Uses a NumericPropertyFormatter to generate a formatted output
formattedOutput() - Method in interface pulse.properties.Property: Formats the value so that it is suitable for output using the GUI or console.
FOV_INNER - pulse.properties.NumericPropertyKeyword: The inner field of view diameter for the detector sighting.
FOV_OUTER - pulse.properties.NumericPropertyKeyword: The outer field of view diameter for the detector sighting.
FrameVisibilityRequestListener - Interface in pulse.ui.components.listeners
fromAbbreviation(String) - Method in class pulse.tasks.processing.ResultFormat: Finds a NumericPropertyKeyword contained in the nameMap, the description of which matches descriptor.
FTest - Class in pulse.search.statistics: A static class for testing two calculations based on the Fischer test (F-Test) implemented in Apache Commons Math.
fullSum(int, int) - Method in class pulse.problem.schemes.rte.dom.PhaseFunction
function(int, int) - Method in class pulse.problem.schemes.rte.dom.CornetteSchanksPF
function(int, int) - Method in class pulse.problem.schemes.rte.dom.HenyeyGreensteinPF
function(int, int) - Method in class pulse.problem.schemes.rte.dom.LinearAnisotropicPF
function(int, int) - Method in class pulse.problem.schemes.rte.dom.PhaseFunction
FunctionSerializer - Class in pulse.util
FunctionWithInterpolation - Class in pulse.math: An abstract class for univariate functions with the capacity of spline interpolation.
FunctionWithInterpolation(Segment) - Constructor for class pulse.math.FunctionWithInterpolation: Creates a FunctionWithInterpolation using the parameterBounds and a default number of points 8192.
FunctionWithInterpolation(Segment, int) - Constructor for class pulse.math.FunctionWithInterpolation: Constructs a FunctionWithInterpolation by tabulating the function values within the parameterBounds at discrete nodes, the number of which is given by the second argument.

G

Gas - Class in pulse.problem.statements.model
Gas(int, double) - Constructor for class pulse.problem.statements.model.Gas
GAS_EXCHANGE_COEFFICIENT - pulse.properties.NumericPropertyKeyword: Energy exchange coefficient in the two-temperature model (g').
generalisedBinomial(double, int) - Static method in class pulse.math.LegendrePoly: Calculates the generalised binomial coefficient.
GeneralTask<I extends DiscreteInput,R extends Response> - Class in pulse.search
GeneralTask() - Constructor for class pulse.search.GeneralTask
generate(int) - Method in class pulse.problem.schemes.rte.dom.StretchedGrid
generateFormat(List<NumericPropertyKeyword>) - Static method in class pulse.tasks.processing.ResultFormat
generateGrid(int) - Method in class pulse.problem.schemes.rte.dom.AdaptiveIntegrator: Generates a uniform grid using the argument as the density.
generateGrid(int) - Method in class pulse.problem.schemes.rte.dom.TRBDF2: Generates a non-uniform (stretched at boundaries) grid using the argument as the density.
generateTask(File) - Method in class pulse.tasks.TaskManager: Generates a SearchTask assuming that the ExperimentalData is stored in the file.
generateTasks(List<File>) - Method in class pulse.tasks.TaskManager: Generates multiple tasks from multiple files.
generateUniform(boolean) - Method in class pulse.problem.schemes.rte.dom.StretchedGrid
generateUniformBase(int, boolean) - Method in class pulse.problem.schemes.rte.dom.StretchedGrid
genericProperties() - Method in class pulse.search.direction.PathOptimiser: This method has been overriden to account for each individual flag in the List<Flag> set out by this class.
genericProperties() - Method in class pulse.util.Accessible: Tries to access the property getter methods in this Accessible, which should be declared as no-argument methods with a specific return type.
genericProperty(Property) - Method in class pulse.util.Accessible: Recursively searches for a Property from the non-unique list of generic properties in this Accessible by comparing its class to sameClass.getClass().
get(int) - Method in class pulse.math.linear.Vector: Gets the component of this Vector specified by index
get(int) - Static method in class pulse.problem.schemes.rte.exact.ExponentialIntegrals: Retrieves the pre-calculated interpolation functions for the exponential integrals.
get(int, int) - Method in class pulse.math.linear.RectangularMatrix
get(NumericPropertyKeyword) - Static method in class pulse.search.direction.ActiveFlags
getAbbreviation(boolean) - Method in class pulse.properties.NumericProperty
getAbsoluteTolerance() - Method in class pulse.problem.schemes.rte.dom.AdaptiveIntegrator
getAbsorptionModel() - Method in class pulse.problem.statements.PenetrationProblem
getAbsorptionSelector() - Method in class pulse.problem.statements.PenetrationProblem
getAbsorptivity(SpectralRange) - Method in class pulse.problem.statements.model.AbsorptionModel
getAllDescriptors() - Method in class pulse.util.InstanceDescriptor
getAllFlags() - Static method in class pulse.search.direction.ActiveFlags
getAllOptions() - Method in class pulse.util.DiscreteSelector
getAlpha() - Method in class pulse.problem.schemes.rte.exact.CompositionProduct
getAlpha() - Method in class pulse.problem.schemes.TridiagonalMatrixAlgorithm
getAmplitude() - Method in class pulse.math.filters.Randomiser
getAmplitude() - Method in class pulse.math.Harmonic
getAmpltiudeSpectrum() - Method in class pulse.math.FFTTransformer
getAnisotropyFactor() - Method in class pulse.problem.schemes.rte.dom.PhaseFunction
getApparentValue() - Method in class pulse.math.Parameter
getBaseline() - Method in class pulse.problem.statements.Problem: Return the Baseline of this Problem.
getBaselineCorrectedData() - Method in class pulse.HeatingCurve
getBaselineDescriptor() - Method in class pulse.problem.statements.Problem
getBestSoFar() - Method in class pulse.search.direction.pso.SwarmState
getBestSoFarIndex() - Method in class pulse.search.direction.pso.SwarmState
getBestState() - Method in class pulse.search.direction.pso.Particle: Returns the personal best state ever achieved by the particle.
getBestState() - Method in class pulse.search.GeneralTask
getBeta() - Method in class pulse.problem.schemes.rte.exact.CompositionProduct
getBeta() - Method in class pulse.problem.schemes.TridiagonalMatrixAlgorithm
getBinCount() - Method in class pulse.ui.components.ResidualsChart
getBounds() - Method in class pulse.math.AbstractIntegrator: Retrieves the integration bounds
getBounds() - Method in class pulse.math.Parameter
getBounds() - Method in class pulse.math.transforms.BoundedParameterTransform
getBounds() - Method in class pulse.properties.NumericProperty: Represents the bounds specified for this numeric property as a Segment object.
getBounds() - Method in class pulse.properties.NumericPropertyFormatter
getBuffer() - Method in class pulse.search.GeneralTask
getButcherTableau() - Method in class pulse.problem.schemes.rte.dom.ExplicitRungeKutta
getC() - Method in class pulse.problem.schemes.rte.dom.ButcherTableau
getCalculationStatus() - Method in class pulse.problem.schemes.CoupledImplicitScheme
getCellEditor(int, int) - Method in class pulse.ui.components.PropertyHolderTable
getCellEditorValue() - Method in class pulse.ui.components.controllers.ButtonEditor
getCellEditorValue() - Method in class pulse.ui.components.controllers.InstanceCellEditor
getCellEditorValue() - Method in class pulse.ui.components.controllers.NumberEditor
getCellRenderer(int, int) - Method in class pulse.ui.components.CalculationTable
getCellRenderer(int, int) - Method in class pulse.ui.components.PropertyHolderTable
getCellRenderer(int, int) - Method in class pulse.ui.components.ResultTable
getCellRenderer(int, int) - Method in class pulse.ui.components.TaskTable
getCharacteristicTime() - Method in class pulse.problem.laser.DiscretePulse: Gets the dimensional factor required to convert real time variable into a dimensional variable, defined in the Problem class
getChart() - Method in class pulse.ui.components.AuxPlotter
getChart() - Method in class pulse.ui.frames.ExternalGraphFrame
getChart() - Method in class pulse.ui.frames.InternalGraphFrame
getChart() - Static method in class pulse.ui.frames.MainGraphFrame
getChartPanel() - Method in class pulse.ui.components.AuxPlotter
getChartPanel() - Method in class pulse.ui.components.Chart
getChartPlot() - Method in class pulse.ui.components.Chart
getCoefA() - Method in class pulse.problem.schemes.TridiagonalMatrixAlgorithm
getCoefB() - Method in class pulse.problem.schemes.TridiagonalMatrixAlgorithm
getCoefC() - Method in class pulse.problem.schemes.TridiagonalMatrixAlgorithm
getColor() - Method in enum pulse.problem.statements.ProblemComplexity
getColor() - Method in enum pulse.tasks.logs.Status
getColumnCount() - Method in class pulse.ui.components.models.ParameterTableModel
getColumnCount() - Method in class pulse.ui.components.models.SelectedKeysModel
getCombinedAbsorptivity() - Method in class pulse.problem.statements.model.AbsorptionModel
getCombinedLosses() - Method in class pulse.problem.statements.model.ExtendedThermalProperties
getComplexity() - Method in class pulse.problem.statements.Problem
getConductivity() - Method in class pulse.problem.statements.model.Gas
getConfirmAction() - Method in class pulse.ui.frames.dialogs.FormattedInputDialog
getConvectiveLosses() - Method in class pulse.problem.statements.model.DiathermicProperties
getConvectiveLosses() - Method in class pulse.problem.statements.model.ThermoOpticalProperties
getCorrelationBuffer() - Method in class pulse.tasks.SearchTask
getCorrelationTest() - Method in class pulse.tasks.SearchTask
getCost() - Method in class pulse.search.direction.IterativeState
getCoupling() - Method in class pulse.problem.schemes.CoupledImplicitScheme
getCoupling() - Method in class pulse.problem.schemes.solvers.ExplicitCoupledSolver
getCpuUsage() - Method in class pulse.util.ResourceMonitor
getCurrentPulseValue() - Method in class pulse.problem.schemes.DifferenceScheme
getCurrentSolution() - Method in class pulse.problem.schemes.OneDimensionalScheme
getCurrentState() - Method in class pulse.search.direction.pso.Particle: Returns the current state (position, velocity, fitness) of the particle.
getCurrentVersion() - Static method in class pulse.ui.Version
getCurveExtensions() - Static method in class pulse.io.readers.ReaderManager: Returns a list of extensions recognised by the available CurveReaders.
getCutoff() - Method in class pulse.problem.schemes.rte.exact.NewtonCotesQuadrature
getDampingRatio() - Method in class pulse.search.direction.LMOptimiser
getData() - Method in class pulse.input.InterpolationDataset: Extracts all data available in this InterpolationDataset.
getData() - Method in class pulse.input.listeners.DataEvent: Used to get the ExperimentalData object that has undergone certain changes specified by this event type.
getData() - Method in class pulse.math.filters.HalfTimeCalculator
getData() - Method in class pulse.math.linear.RectangularMatrix
getData() - Method in class pulse.math.linear.Vector
getData() - Method in class pulse.problem.laser.NumericPulse
getData() - Method in class pulse.tasks.logs.DataLogEntry
getData() - Method in class pulse.tasks.processing.Buffer: Retrieves the contents of this Buffer.
getData() - Method in class pulse.ui.components.models.ParameterTableModel
getData() - Method in class pulse.ui.components.models.SelectedKeysModel
getDataObject() - Method in class pulse.ui.frames.DataFrame
getDataset() - Method in class pulse.ui.components.buttons.LoaderButton
getDatasetExtensions() - Static method in class pulse.io.readers.ReaderManager: Returns a list of extensions recognised by the available DatasetReaders.
getDefaultExportExtension() - Static method in interface pulse.io.export.Exporter: Gets the default export extension.
getDefaultSelection() - Method in class pulse.util.DiscreteSelector
getDelims() - Static method in class pulse.io.readers.NetzschCSVReader: Get the standard delimiter chars.
getDensity() - Method in class pulse.problem.schemes.rte.dom.StretchedGrid
getDensity() - Method in class pulse.problem.schemes.rte.Fluxes
getDensity() - Method in class pulse.problem.statements.model.ThermalProperties
getDensityDataset() - Method in class pulse.tasks.TaskManager
getDerivative(int, int) - Method in class pulse.problem.schemes.rte.dom.DiscreteQuantities
getDerivatives() - Method in class pulse.problem.schemes.rte.dom.DiscreteQuantities
getDescriptor() - Method in class pulse.baseline.Baseline
getDescriptor() - Method in class pulse.problem.schemes.rte.dom.DiscreteOrdinatesMethod
getDescriptor() - Method in class pulse.problem.schemes.rte.dom.Discretisation
getDescriptor() - Method in class pulse.problem.schemes.rte.dom.ODEIntegrator
getDescriptor() - Method in class pulse.problem.schemes.rte.dom.StretchedGrid
getDescriptor() - Method in class pulse.problem.schemes.rte.exact.NonscatteringRadiativeTransfer
getDescriptor() - Method in class pulse.problem.statements.model.ExtendedThermalProperties
getDescriptor() - Method in class pulse.problem.statements.model.ThermalProperties
getDescriptor() - Method in class pulse.problem.statements.model.ThermoOpticalProperties
getDescriptor() - Method in class pulse.search.statistics.AbsoluteDeviations
getDescriptor() - Method in class pulse.search.statistics.AICStatistic
getDescriptor() - Method in class pulse.search.statistics.AndersonDarlingTest
getDescriptor() - Method in class pulse.search.statistics.BICStatistic
getDescriptor() - Method in class pulse.search.statistics.EmptyCorrelationTest
getDescriptor() - Method in class pulse.search.statistics.EmptyTest
getDescriptor() - Method in class pulse.search.statistics.KSTest
getDescriptor() - Method in class pulse.search.statistics.PearsonCorrelation
getDescriptor() - Method in class pulse.search.statistics.RangePenalisedLeastSquares
getDescriptor() - Method in class pulse.search.statistics.RegularisedLeastSquares
getDescriptor() - Method in class pulse.search.statistics.RSquaredTest
getDescriptor() - Method in class pulse.search.statistics.SpearmansCorrelationTest
getDescriptor() - Method in class pulse.search.statistics.SumOfSquares
getDescriptor() - Method in class pulse.util.Group: The same as getSimpleName in this implementation.
getDescriptor() - Method in class pulse.util.PropertyHolder: If not null, will return the prefix, otherwise calls the superclass method.
getDescriptor(boolean) - Method in class pulse.properties.Flag: Creates a short description for the GUI.
getDescriptor(boolean) - Method in class pulse.properties.NumericProperty
getDescriptor(boolean) - Method in interface pulse.properties.Property: Creates a String to describe this property (often used in GUI applications).
getDescriptor(boolean) - Method in class pulse.properties.SampleName
getDescriptor(boolean) - Method in class pulse.util.DiscreteSelector
getDescriptor(boolean) - Method in class pulse.util.InstanceDescriptor
getDetailedMessage() - Method in enum pulse.tasks.logs.Status
getDetails() - Method in enum pulse.tasks.logs.Status
getDiathermicCoefficient() - Method in class pulse.problem.statements.model.DiathermicProperties
getDiffusivity() - Method in class pulse.problem.statements.model.ThermalProperties
getDimension() - Method in class pulse.problem.schemes.rte.dom.StretchedGrid
getDimensionDelta() - Method in class pulse.properties.NumericProperty
getDimensionFactor() - Method in class pulse.properties.NumericProperty
getDirection() - Method in class pulse.search.direction.GradientGuidedPath
getDiscreteIntensities() - Method in class pulse.problem.schemes.rte.dom.PhaseFunction
getDiscretePulse() - Method in class pulse.problem.schemes.DifferenceScheme: Gets the discrete representation of Pulse on the Grid.
getDiscretePulseSpot() - Method in class pulse.problem.laser.DiscretePulse2D
getDiscreteWidth() - Method in class pulse.problem.laser.DiscretePulse: Gets the discrete dimensionless pulse width, which is a multiplier of the current grid timestep.
getDiscretisation() - Method in class pulse.problem.schemes.rte.dom.ODEIntegrator
getEffectiveEndTime() - Method in class pulse.input.ExperimentalData: Gets the time sequence element corresponding to the upper bound of the index range
getEffectiveStartTime() - Method in class pulse.input.ExperimentalData: Gets the time sequence element corresponding to the lower bound of the index range
getElementAt(int) - Method in class pulse.ui.components.models.ParameterTableModel
getElementAt(int) - Method in class pulse.ui.components.models.SelectedKeysModel
getElementAt(int) - Method in class pulse.ui.components.models.TaskBoxModel
getEmissionFunction() - Method in class pulse.problem.schemes.rte.dom.ODEIntegrator
getEmissionFunction() - Method in class pulse.problem.schemes.rte.exact.CompositionProduct
getEmissionFunction() - Method in class pulse.problem.schemes.rte.exact.NonscatteringRadiativeTransfer
getEmissivity() - Method in class pulse.problem.statements.model.ThermalProperties
getEnd() - Method in class pulse.tasks.logs.Log: This is the time after the creation of the Log when a change of status to DONE happened.
getError() - Method in class pulse.properties.NumericProperty
getErrorTolerance() - Method in class pulse.search.direction.PathOptimiser
getEstimator() - Method in class pulse.problem.schemes.rte.dom.ButcherTableau
getExcludeKeywords() - Method in class pulse.properties.NumericProperty
getExecutionState() - Method in class pulse.ui.components.buttons.ExecutionButton
getExternalID() - Method in class pulse.input.Metadata: Gets the external ID usually specified in the experimental files.
getExternalID() - Method in class pulse.problem.laser.NumericPulseData: Gets the external ID usually specified in the experimental files.
getFailedAttempts() - Method in class pulse.search.direction.IterativeState
getFilteredAverage() - Method in class pulse.math.ZScore
getFilteredMaximum() - Method in class pulse.math.filters.HalfTimeCalculator
getFilteredStdev() - Method in class pulse.math.ZScore
getFirst() - Method in class pulse.util.ImmutablePair
getFirstNegativeNode() - Method in class pulse.problem.schemes.rte.dom.OrdinateSet
getFirstPositiveNode() - Method in class pulse.problem.schemes.rte.dom.OrdinateSet
getFitness() - Method in class pulse.search.direction.pso.ParticleState
getFlux(int) - Method in class pulse.problem.schemes.rte.Fluxes: Retrieves the currently calculated flux at the i grid point
getFluxDerivative(int) - Method in class pulse.problem.schemes.rte.FluxesAndExplicitDerivatives
getFluxes() - Method in class pulse.problem.schemes.rte.RadiativeTransferSolver
getFormat() - Method in class pulse.tasks.processing.AbstractResult
getFormat() - Method in class pulse.ui.components.models.ResultTableModel
getFOVInner() - Method in class pulse.problem.statements.model.ExtendedThermalProperties
getFOVOuter() - Method in class pulse.problem.statements.model.ExtendedThermalProperties
getFrequency() - Method in class pulse.math.Harmonic
getGamma() - Method in class pulse.problem.schemes.BlockMatrixAlgorithm
getGas() - Method in class pulse.problem.statements.TwoTemperatureModel
getGasExchangeCoefficient() - Method in class pulse.problem.statements.model.TwoTemperatureProperties
getGasHeatLoss() - Method in class pulse.problem.statements.model.TwoTemperatureProperties
getGasSelector() - Method in class pulse.problem.statements.TwoTemperatureModel
getGeometricFactor() - Method in class pulse.problem.statements.ClassicalProblem
getGradient() - Method in class pulse.search.direction.GradientGuidedPath
getGradientResolution() - Method in class pulse.search.direction.GradientBasedOptimiser
getGradientStep() - Method in class pulse.search.direction.GradientBasedOptimiser
getGrid() - Method in class pulse.problem.laser.DiscretePulse: Gets the Grid object used to construct this DiscretePulse
getGrid() - Method in class pulse.problem.schemes.DifferenceScheme: Gets the Grid object defining partioning used in this DifferenceScheme
getGrid() - Method in class pulse.problem.schemes.rte.dom.Discretisation
getGridDensity() - Method in class pulse.problem.schemes.Grid: Retrieves the value of the gridDensity used to calculate the hx and tau.
getGridDensityValue() - Method in class pulse.problem.schemes.Grid
getGridPoints() - Method in class pulse.problem.schemes.TridiagonalMatrixAlgorithm
getGridScalingFactor() - Method in class pulse.problem.schemes.rte.dom.AdaptiveIntegrator
getGridStep() - Method in class pulse.problem.schemes.TridiagonalMatrixAlgorithm
getGUIComponent() - Method in class pulse.tasks.logs.AbstractLogger
getGUIComponent() - Method in class pulse.ui.components.GraphicalLogPane
getGUIComponent() - Method in class pulse.ui.components.TextLogPane
getHalfAlbedo() - Method in class pulse.problem.schemes.rte.dom.PhaseFunction
getHalfLength() - Method in class pulse.problem.schemes.rte.dom.OrdinateSet
getHalfTime() - Method in class pulse.math.filters.HalfTimeCalculator: Retrieves the half-time value of this dataset, which is equal to the time needed to reach half of the signal maximum.
getHalfTimeCalculator() - Method in class pulse.input.ExperimentalData
getHarmonics() - Method in class pulse.baseline.SinusoidalBaseline
getHeatingCurve() - Method in class pulse.problem.statements.Problem
getHeatLoss() - Method in class pulse.problem.statements.model.ThermalProperties: Assuming that Bi₁ = Bi₂, returns the value of Bi₁.
getHermiteInterpolator() - Method in class pulse.problem.schemes.rte.dom.AdaptiveIntegrator
getHessian() - Method in class pulse.search.direction.ComplexPath
getHideDetailsCheckBox() - Method in class pulse.ui.components.panels.SettingsToolBar
getHierarchyListeners() - Method in class pulse.util.UpwardsNavigable
getHiFreqMax() - Method in class pulse.baseline.SinusoidalBaseline
getIcon() - Method in enum pulse.ui.components.buttons.ExecutionButton.ExecutionState
getId() - Method in class pulse.search.direction.pso.Particle
getId() - Method in class pulse.tasks.listeners.TaskRepositoryEvent
getIdentifier() - Method in class pulse.math.Parameter
getIdentifier() - Method in class pulse.tasks.logs.Log
getIdentifier() - Method in class pulse.tasks.logs.LogEntry
getIdentifier() - Method in class pulse.tasks.SearchTask
getIndex() - Method in class pulse.math.ParameterIdentifier
getIndexRange() - Method in interface pulse.DiscreteInput
getIndexRange() - Method in class pulse.input.ExperimentalData: Gets the index range of this data.
getIndexRange() - Method in class pulse.problem.laser.NumericPulseData
getIndividualResults() - Method in class pulse.tasks.processing.AverageResult: This will analyse the list of AbstractResults used for calculation of the mean and find all associated individual results.
getInput() - Method in class pulse.search.GeneralTask
getInput() - Method in class pulse.search.SimpleOptimisationTask
getInput() - Method in class pulse.tasks.SearchTask
getInstance() - Static method in class pulse.io.export.CurveExporter: Returns the single instance of this subclass.
getInstance() - Static method in class pulse.io.export.LogExporter: Gets the only static instance of this subclass.
getInstance() - Static method in class pulse.io.export.MetadataExporter: Retrieves the single instance of this class.
getInstance() - Static method in class pulse.io.export.RawDataExporter: Retrieves the single static instance of this class
getInstance() - Static method in class pulse.io.export.ResidualStatisticExporter: Retrieves the single instance of this class.
getInstance() - Static method in class pulse.io.export.ResultExporter: Returns the single static instance of this class.
getInstance() - Static method in class pulse.io.export.ResultTableExporter: Gets the single instance of this class.
getInstance() - Static method in class pulse.io.export.TextLogPaneExporter: Gets the only static instance of this subclass.
getInstance() - Static method in class pulse.io.readers.ButcherTableauReader
getInstance() - Static method in class pulse.io.readers.DATReader: As this class uses the singleton pattern, only one instance is created using an empty no-argument constructor.
getInstance() - Static method in class pulse.io.readers.LFRReader: Retrieves the single instance of this class.
getInstance() - Static method in class pulse.io.readers.MetaFilePopulator: Gets the single instance of this class.
getInstance() - Static method in class pulse.io.readers.NetzschCSVReader: As this class uses the singleton pattern, only one instance is created using an empty no-argument constructor.
getInstance() - Static method in class pulse.io.readers.NetzschPulseCSVReader: As this class uses the singleton pattern, only one instance is created using an empty no-argument constructor.
getInstance() - Static method in class pulse.io.readers.QuadratureReader: Returns the single instance of this class.
getInstance() - Static method in class pulse.io.readers.TBLReader: As this class is built using a singleton pattern, only one instance exists.
getInstance() - Static method in class pulse.search.direction.BFGSOptimiser: This class uses a singleton pattern, meaning there is only instance of this class.
getInstance() - Static method in class pulse.search.direction.LMOptimiser: This class uses a singleton pattern, meaning there is only instance of this class.
getInstance() - Static method in class pulse.search.direction.PathOptimiser
getInstance() - Static method in class pulse.search.direction.SR1Optimiser: This class uses a singleton pattern, meaning there is only instance of this class.
getInstance() - Static method in class pulse.search.direction.SteepestDescentOptimiser: This class uses a singleton pattern, meaning there is only instance of this class.
getInstance() - Static method in class pulse.search.linear.GoldenSectionOptimiser: This class uses a singleton pattern, meaning there is only instance of this class.
getInstance() - Static method in class pulse.search.linear.WolfeOptimiser: This class uses a singleton pattern, meaning there is only instance of this class.
getInstance() - Static method in class pulse.tasks.processing.ResultFormat: This class uses a singleton pattern, meaning there is only instance of this class.
getInstance() - Static method in class pulse.ui.frames.MainGraphFrame
getInstance() - Static method in class pulse.ui.frames.TaskControlFrame
getInstance() - Static method in class pulse.util.ResourceMonitor
getInstanceDescriptor() - Method in class pulse.problem.schemes.RadiativeTransferCoupling
getInstanceDescriptor() - Method in class pulse.problem.schemes.rte.exact.NonscatteringRadiativeTransfer
getIntegrationSegments() - Method in class pulse.math.FixedIntervalIntegrator: Retrieves the number of integration segments.
getIntegrator() - Method in class pulse.problem.schemes.rte.dom.DiscreteOrdinatesMethod
getIntegrator() - Method in class pulse.problem.schemes.rte.exact.NewtonCotesQuadrature: This will retrieve the Newton-Cotes integrator, which by default is the Simpson integrator.
getIntegratorDescriptor() - Method in class pulse.problem.schemes.rte.dom.DiscreteOrdinatesMethod
getIntensities() - Method in class pulse.problem.schemes.rte.dom.DiscreteQuantities
getIntensity(int, int) - Method in class pulse.problem.schemes.rte.dom.DiscreteQuantities
getIntercept() - Method in class pulse.baseline.AdjustableBaseline: Provides getter accessibility to the intercept as a NumericProperty
getInterpolation() - Method in class pulse.HeatingCurve
getInterpolation() - Method in class pulse.problem.laser.NumericPulse
getInterpolation() - Method in class pulse.problem.schemes.rte.BlackbodySpectrum
getInterpolator() - Method in class pulse.problem.schemes.rte.dom.ButcherTableau
getInverseHessian() - Method in class pulse.search.direction.ComplexPath
getItemViewStored() - Method in class pulse.ui.components.TaskPopupMenu
getIteration() - Method in class pulse.search.direction.IterativeState
getIterationError() - Method in class pulse.problem.schemes.rte.dom.IterativeSolver
getIterationErrorTolerance() - Method in class pulse.problem.schemes.rte.dom.IterativeSolver
getIterativeSolver() - Method in class pulse.problem.schemes.rte.dom.DiscreteOrdinatesMethod
getIterativeSolverSelector() - Method in class pulse.problem.schemes.rte.dom.DiscreteOrdinatesMethod
getIterativeState() - Method in class pulse.search.GeneralTask
getKey() - Method in class pulse.util.ImmutableDataEntry: Gets the key object
getKeyword() - Method in class pulse.math.ParameterIdentifier
getKeywords() - Method in class pulse.tasks.processing.ResultFormat: Retrieves the list of keyword associated with this ResultFormat
getLambda() - Method in class pulse.problem.laser.ExponentiallyModifiedGaussian
getLambda() - Method in class pulse.search.statistics.RangePenalisedLeastSquares: The lambda is the regularisation strength.
getLambda() - Method in class pulse.search.statistics.RegularisedLeastSquares: The lambda is the regularisation strength.
getLaserAbsorptivity() - Method in class pulse.problem.statements.model.AbsorptionModel
getLaserEnergy() - Method in class pulse.problem.statements.Pulse
getLinearOptimiserDescriptor() - Method in class pulse.search.direction.CompositePathOptimiser
getLinearResolution() - Static method in class pulse.search.linear.LinearOptimiser: The linear resolution determines the minimum distance between any two points belonging to the domain of this search while they still are considered separate.
getLinearSolver() - Method in class pulse.search.direction.CompositePathOptimiser
getListCellRendererComponent(JList<?>, Object, int, boolean, boolean) - Method in class pulse.ui.components.controllers.SearchListRenderer
getListeners() - Method in class pulse.tasks.logs.Log
getListeners() - Method in class pulse.util.DiscreteSelector
getListeners() - Method in class pulse.util.InstanceDescriptor
getListeners() - Method in class pulse.util.PropertyHolder
getLog() - Method in class pulse.tasks.SearchTask
getLogEntries() - Method in class pulse.tasks.logs.Log
getLogger() - Method in class pulse.ui.frames.LogFrame
getLowerBound() - Method in class pulse.input.IndexRange: Gets the integer value representing the index of the lower bound previously set by looking at a certain unspecified data list.
getLowerBound() - Method in class pulse.input.Range: Gets the numeric property defining the lower bound of this range.
getLowerLimitField() - Method in class pulse.ui.components.RangeTextFields
getLowFreqMax() - Method in class pulse.baseline.SinusoidalBaseline
getManagerInstance() - Static method in class pulse.tasks.TaskManager: This class uses a singleton pattern, meaning there is only instance of this class.
getMatrix() - Method in class pulse.problem.schemes.rte.dom.ButcherTableau
getMaximum() - Method in class pulse.math.Segment: Gets the b value for this Segment
getMaximum() - Method in class pulse.properties.NumericProperty
getMaximumTemperature() - Method in class pulse.problem.statements.model.ThermalProperties
getMaxIterations() - Method in class pulse.problem.schemes.rte.dom.IterativeSolver
getMaxIterations() - Method in class pulse.search.direction.PathOptimiser
getMemoryUsage() - Method in class pulse.util.ResourceMonitor
getMessage() - Method in enum pulse.tasks.logs.Status
getMessage() - Method in enum pulse.ui.components.buttons.ExecutionButton.ExecutionState
getMetadata() - Method in class pulse.input.ExperimentalData: Retrieves the Metadata object for this ExperimentalData.
getMinimalArray() - Static method in class pulse.tasks.processing.ResultFormat
getMinimum() - Method in class pulse.math.Segment: Gets the a value for this Segment
getMinimum() - Method in class pulse.properties.NumericProperty
getMinimumPoint() - Method in class pulse.search.direction.GradientGuidedPath
getMode() - Method in class pulse.ui.frames.TaskControlFrame
getModelSelectionCriterion() - Method in class pulse.tasks.Calculation
getModelSelectionDescriptor() - Static method in class pulse.tasks.Calculation
getMolarMass() - Method in class pulse.problem.statements.model.Gas
getMu() - Method in class pulse.problem.laser.ExponentiallyModifiedGaussian
getName() - Method in class pulse.AbstractData
getName() - Method in class pulse.problem.schemes.rte.dom.OrdinateSet
getNeighborhoodTopology() - Method in class pulse.search.direction.pso.SwarmState
getNeighbours() - Method in class pulse.search.direction.pso.Particle
getNode(int) - Method in class pulse.problem.schemes.rte.dom.OrdinateSet
getNode(int) - Method in class pulse.problem.schemes.rte.dom.StretchedGrid
getNodes() - Method in class pulse.problem.schemes.rte.dom.CompositeGaussianQuadrature: The cosine nodes of the composite quadrature.
getNodes() - Method in class pulse.problem.schemes.rte.dom.StretchedGrid
getNonlinearPrecision() - Method in class pulse.problem.schemes.solvers.ExplicitCoupledSolverNL
getNonlinearPrecision() - Method in class pulse.problem.schemes.solvers.ExplicitNonlinearSolver
getNonlinearPrecision() - Method in class pulse.problem.schemes.solvers.ImplicitCoupledSolverNL
getNonlinearPrecision() - Method in class pulse.problem.schemes.solvers.ImplicitNonlinearSolver
getNonlinearPrecision() - Method in class pulse.problem.schemes.solvers.ImplicitTwoTemperatureSolver
getNonlinearPrecision() - Method in class pulse.problem.schemes.solvers.MixedCoupledSolverNL
getNormalityTest() - Method in class pulse.tasks.SearchTask
getNumberOfAtoms() - Method in class pulse.problem.statements.model.Gas
getNumberOfBins() - Method in class pulse.math.filters.RunningAverage
getNumberOfNodes() - Method in class pulse.problem.schemes.rte.dom.OrdinateSet
getNumPoints() - Method in class pulse.AbstractData: Getter method providing accessibility to the count NumericProperty.
getNumVariables() - Method in class pulse.search.statistics.ModelSelectionCriterion
getOpacity() - Method in class pulse.ui.components.Chart
getOpticalGridStep() - Method in class pulse.problem.schemes.rte.Fluxes
getOpticalThickness() - Method in class pulse.problem.schemes.rte.Fluxes
getOpticalThickness() - Method in class pulse.problem.statements.model.ThermoOpticalProperties
getOptimiserStatistic() - Method in interface pulse.Response
getOptimiserStatistic() - Method in class pulse.search.SimpleResponse
getOptimiserStatistic() - Method in class pulse.search.statistics.ModelSelectionCriterion
getOptimiserStatistic() - Method in class pulse.tasks.Calculation
getOrder() - Method in class pulse.math.LegendrePoly
getOrder() - Method in class pulse.problem.schemes.rte.exact.CompositionProduct
getOrdinates() - Method in class pulse.problem.schemes.rte.dom.Discretisation
getP() - Method in class pulse.problem.schemes.BlockMatrixAlgorithm
getParameterBounds() - Method in class pulse.math.FunctionWithInterpolation: Retrieves the parameter bounds.
getParameters() - Method in class pulse.math.ParameterVector
getParameters() - Method in class pulse.search.direction.IterativeState
getParameterValue(NumericPropertyKeyword, int) - Method in class pulse.math.ParameterVector
getParent() - Method in class pulse.util.UpwardsNavigable: Return the parent of this UpwardsNavigable -- if is has been previously explicitly set.
getParticles() - Method in class pulse.search.direction.pso.SwarmState: Returns the particles of the swarm.
getPhaseFunction() - Method in class pulse.problem.schemes.rte.dom.ODEIntegrator
getPhaseFunctionSelector() - Method in class pulse.problem.schemes.rte.dom.DiscreteOrdinatesMethod
getPhaseShift() - Method in class pulse.math.Harmonic
getPhaseSpectrum() - Method in class pulse.math.FFTTransformer
getPhysicalPulse() - Method in class pulse.problem.laser.DiscretePulse: Gets the physical Pulse
getPlanckNumber() - Method in class pulse.problem.statements.model.ThermoOpticalProperties
getPlot() - Method in class pulse.ui.components.AuxPlotter
getPosition() - Method in class pulse.search.direction.pso.ParticleState
getPrefix() - Method in class pulse.math.AbstractIntegrator
getPrefix() - Method in class pulse.math.FixedIntervalIntegrator
getPrefix() - Method in class pulse.problem.laser.PulseTemporalShape
getPrefix() - Method in class pulse.problem.schemes.RadiativeTransferCoupling
getPrefix() - Method in class pulse.problem.schemes.rte.exact.CompositionProduct
getPrefix() - Method in class pulse.problem.schemes.rte.RadiativeTransferSolver
getPrefix() - Method in class pulse.util.PropertyHolder
getPreviousEntry() - Method in class pulse.tasks.logs.LogEntry
getPreviousSolution() - Method in class pulse.problem.schemes.OneDimensionalScheme
getProblem() - Method in class pulse.tasks.Calculation
getProblem() - Method in class pulse.ui.components.listeners.ProblemSelectionEvent
getProperties() - Method in class pulse.problem.statements.Problem
getProperties() - Method in class pulse.tasks.processing.AbstractResult: Returns a list of NumericProperties, which conform to the chosen ResultFormat
getProperty() - Method in class pulse.util.PropertyEvent: Gets the property, which is related to this event.
getProperty(int) - Method in class pulse.tasks.processing.AbstractResult
getPropertyHolder() - Method in class pulse.ui.components.PropertyHolderTable
getPropertyHolder() - Method in class pulse.util.PropertyEvent
getPulse() - Method in class pulse.problem.statements.Problem
getPulseData() - Method in class pulse.input.Metadata: If a Numerical Pulse has been loaded (for example, when importing from Proteus), this will return an object describing this data.
getPulseDescriptor() - Method in class pulse.input.Metadata: Retrieves the pulse shape recorded in this Metadata
getPulseDescriptor() - Method in class pulse.problem.statements.Pulse
getPulseExtensions() - Static method in class pulse.io.readers.ReaderManager
getPulseFrame() - Method in class pulse.ui.frames.TaskControlFrame
getPulseShape() - Method in class pulse.problem.statements.Pulse
getPulseWidth() - Method in class pulse.problem.laser.PulseTemporalShape
getPulseWidth() - Method in class pulse.problem.statements.Pulse
getQ() - Method in class pulse.problem.schemes.BlockMatrixAlgorithm
getQLast(int) - Method in class pulse.problem.schemes.rte.dom.DiscreteQuantities
getQuadrature() - Method in class pulse.problem.schemes.rte.exact.NonscatteringRadiativeTransfer: Retrieves the quadrature that is used to evaluate the composition product invoked when calculating the radiative fluxes.
getQuadraturePoints() - Method in class pulse.problem.schemes.rte.exact.ChandrasekharsQuadrature
getQuadratureSelector() - Method in class pulse.problem.schemes.rte.dom.Discretisation
getQuantities() - Method in class pulse.problem.schemes.rte.dom.Discretisation
getRadialConversionFactor() - Method in class pulse.problem.laser.DiscretePulse2D
getRadiativeTransferEquation() - Method in class pulse.problem.schemes.RadiativeTransferCoupling
getRadiosityFront() - Method in class pulse.problem.schemes.rte.exact.NonscatteringRadiativeTransfer
getRadiosityRear() - Method in class pulse.problem.schemes.rte.exact.NonscatteringRadiativeTransfer
getRange() - Method in class pulse.input.ExperimentalData: Gets the dimensional time Range of this data.
getRank() - Method in class pulse.math.Harmonic
getReflectance() - Method in class pulse.problem.statements.model.Insulator
getRelativeTolerance() - Method in class pulse.problem.schemes.rte.dom.AdaptiveIntegrator
getRelaxationParameter() - Method in class pulse.problem.schemes.rte.dom.SuccessiveOverrelaxation
getRequiredDiscretisation() - Method in class pulse.problem.laser.ExponentiallyModifiedGaussian
getRequiredDiscretisation() - Method in class pulse.problem.laser.NumericPulse
getRequiredDiscretisation() - Method in class pulse.problem.laser.PulseTemporalShape
getRequiredDiscretisation() - Method in class pulse.problem.laser.RectangularPulse
getRequiredDiscretisation() - Method in class pulse.problem.laser.TrapezoidalPulse
getResiduals() - Method in class pulse.search.statistics.ResidualStatistic
getResponse() - Method in class pulse.math.filters.PolylineOptimiser
getResponse() - Method in class pulse.search.GeneralTask
getResponse() - Method in class pulse.tasks.SearchTask
getResult() - Method in class pulse.tasks.Calculation
getResultFormat() - Method in class pulse.tasks.listeners.ResultFormatEvent
getResults() - Method in class pulse.ui.components.models.ResultTableModel
getResultTable() - Method in class pulse.ui.frames.ResultFrame
getRowCount() - Method in class pulse.ui.components.models.ParameterTableModel
getRowCount() - Method in class pulse.ui.components.models.SelectedKeysModel
getRTEListeners() - Method in class pulse.problem.schemes.rte.RadiativeTransferSolver
getSampleDiameter() - Method in class pulse.problem.statements.model.ExtendedThermalProperties
getSampleName() - Method in class pulse.input.Metadata: Retrieves the sample name.
getSampleName() - Method in class pulse.tasks.TaskManager: Uses the first non-null SearchTask to retrieve the sample name from the Metadata associated with its ExperimentalData.
getSampleThickness() - Method in class pulse.problem.statements.model.ThermalProperties
getScatteringAlbedo() - Method in class pulse.problem.statements.model.ThermoOpticalProperties
getScatteringAnisostropy() - Method in class pulse.problem.statements.model.ThermoOpticalProperties
getScheme() - Method in class pulse.tasks.Calculation
getSecond() - Method in class pulse.util.ImmutablePair
getSegment() - Method in class pulse.input.Range: Gets the segment representing this range
getSelectedIndex() - Method in class pulse.ui.components.models.TaskBoxModel
getSelectedItem() - Method in class pulse.ui.components.models.TaskBoxModel
getSelectedOptimiserDescriptor() - Static method in class pulse.search.statistics.OptimiserStatistic
getSelectedTask() - Method in class pulse.tasks.TaskManager
getSelectedTestDescriptor() - Static method in class pulse.search.statistics.NormalityTest
getSelectionListeners() - Method in class pulse.tasks.TaskManager
getSideLosses() - Method in class pulse.problem.statements.model.ExtendedThermalProperties
getSigma() - Method in class pulse.problem.laser.ExponentiallyModifiedGaussian
getSignalData() - Method in class pulse.AbstractData
getSignals() - Method in class pulse.math.ZScore
getSimpleName() - Method in class pulse.util.Group: This will generate a simple name for identifying this Accessible.
getSingleStatementCheckBox() - Method in class pulse.ui.components.panels.SettingsToolBar
getSize() - Static method in class pulse.tasks.processing.Buffer: Gets the buffer size (a NumericProperty derived from BUFFER_SIZE.
getSize() - Method in class pulse.ui.components.models.TaskBoxModel
getSlope() - Method in class pulse.baseline.AdjustableBaseline: Provides getter accessibility to the slope as a NumericProperty
getSolidExchangeCoefficient() - Method in class pulse.problem.statements.model.TwoTemperatureProperties
getSolver() - Method in class pulse.search.direction.PathOptimiser
getSource() - Method in class pulse.ui.components.listeners.ProblemSelectionEvent
getSource() - Method in class pulse.util.PropertyEvent: Gets the 'source', which is an Object that is the originator of this event.
getSpecificHeat() - Method in class pulse.problem.statements.model.ThermalProperties
getSpecificHeatDataset() - Method in class pulse.tasks.TaskManager
getSpotDiameter() - Method in class pulse.problem.statements.Pulse2D
getStart() - Method in class pulse.tasks.logs.Log: This is the time after the creation of the Log when a change of status to IN_PROGRESS happened.
getState() - Method in class pulse.tasks.listeners.TaskRepositoryEvent
getState() - Method in class pulse.tasks.logs.StateEntry
getState() - Method in class pulse.ui.components.MovableValueMarker
getStatistic() - Method in class pulse.search.statistics.ModelSelectionCriterion
getStatistic() - Method in class pulse.search.statistics.NormalityTest
getStatistic() - Method in class pulse.search.statistics.ResidualStatistic
getStatisticalSignifiance() - Static method in class pulse.search.statistics.NormalityTest
getStatus() - Method in class pulse.tasks.Calculation
getStatus() - Method in class pulse.tasks.logs.StateEntry
getStatus() - Method in class pulse.tasks.SearchTask
getStoredCalculations() - Method in class pulse.tasks.SearchTask
getStoredDerivative(int, int) - Method in class pulse.problem.schemes.rte.dom.DiscreteQuantities
getStoredFlux(int) - Method in class pulse.problem.schemes.rte.Fluxes: Retrieves the previously calculated flux at the i grid point.
getStoredFluxDerivative(int) - Method in class pulse.problem.schemes.rte.FluxesAndExplicitDerivatives
getStoredIntensity(int, int) - Method in class pulse.problem.schemes.rte.dom.DiscreteQuantities
getStretchingFactor() - Method in class pulse.problem.schemes.rte.dom.StretchedGrid
getString(String) - Static method in class pulse.ui.Messages
getSumOfSquares() - Method in class pulse.search.statistics.RSquaredTest
getSupportedExtension() - Method in interface pulse.io.readers.AbstractHandler: Retrieves the supported extension of files, which this AbstractHandler is able to process.
getSupportedExtension() - Method in class pulse.io.readers.ButcherTableauReader
getSupportedExtension() - Method in class pulse.io.readers.DATReader
getSupportedExtension() - Method in class pulse.io.readers.LFRReader
getSupportedExtension() - Method in class pulse.io.readers.MetaFilePopulator
getSupportedExtension() - Method in class pulse.io.readers.NetzschCSVReader
getSupportedExtension() - Method in class pulse.io.readers.NetzschPulseCSVReader
getSupportedExtension() - Method in class pulse.io.readers.QuadratureReader
getSupportedExtension() - Method in class pulse.io.readers.TBLReader
getSupportedExtensions() - Method in class pulse.io.export.CurveExporter: Currently html and csv extensions are supported.
getSupportedExtensions() - Method in interface pulse.io.export.Exporter: Returns an array of supported extensions, which by default contains only the default extension.
getSupportedExtensions() - Method in class pulse.io.export.LogExporter: Only html is currently supported by this exporter.
getSupportedExtensions() - Method in class pulse.io.export.MetadataExporter
getSupportedExtensions() - Method in class pulse.io.export.RawDataExporter: Currently html and csv extensions are supported.
getSupportedExtensions() - Method in class pulse.io.export.ResidualStatisticExporter: The supported extensions for exporting the data contained in this object.
getSupportedExtensions() - Method in class pulse.io.export.ResultExporter: Currently the supported extensions include .html and .csv.
getSupportedExtensions() - Method in class pulse.io.export.ResultTableExporter: Both html and csv are suported.
getSupportedExtensions() - Method in class pulse.io.export.TextLogPaneExporter: Only html is currently supported by this exporter.
getTableauSelector() - Method in class pulse.problem.schemes.rte.dom.ExplicitRungeKutta
getTableCellEditorComponent(JTable, Object, boolean, int, int) - Method in class pulse.ui.components.controllers.ButtonEditor
getTableCellEditorComponent(JTable, Object, boolean, int, int) - Method in class pulse.ui.components.controllers.InstanceCellEditor
getTableCellEditorComponent(JTable, Object, boolean, int, int) - Method in class pulse.ui.components.controllers.NumberEditor
getTableCellRendererComponent(JTable, Object, boolean, boolean, int, int) - Method in class pulse.ui.components.controllers.AccessibleTableRenderer
getTableCellRendererComponent(JTable, Object, boolean, boolean, int, int) - Method in class pulse.ui.components.controllers.NumericPropertyRenderer
getTableCellRendererComponent(JTable, Object, boolean, boolean, int, int) - Method in class pulse.ui.components.controllers.TaskTableRenderer
getTask() - Method in class pulse.tasks.logs.StateEntry
getTask(int) - Method in class pulse.tasks.TaskManager: Finds a SearchTask using the external identifier specified in its metadata.
getTask(Identifier) - Method in class pulse.tasks.TaskManager: Finds a SearchTask whose Identifier matches id.
getTaskIdentifier() - Method in class pulse.tasks.processing.Result
getTaskList() - Method in class pulse.tasks.TaskManager
getTaskRepositoryListeners() - Method in class pulse.tasks.TaskManager
getTaskToolbar() - Method in class pulse.ui.frames.TaskManagerFrame
getTestDescriptor() - Static method in class pulse.search.statistics.CorrelationTest
getTestTemperature() - Method in class pulse.problem.statements.model.ThermalProperties
getThermalAbsorptivity() - Method in class pulse.problem.statements.model.AbsorptionModel
getThermalConductivity() - Method in class pulse.problem.statements.model.ThermalProperties
getThermalConductivity() - Method in class pulse.problem.statements.NonlinearProblem
getThermalMass() - Method in class pulse.problem.statements.model.Gas
getThermalMass() - Method in class pulse.problem.statements.model.ThermalProperties
getThreadsAvailable() - Method in class pulse.util.ResourceMonitor
getThreshold() - Static method in class pulse.search.statistics.CorrelationTest
getTime() - Method in class pulse.tasks.logs.LogEntry
getTimeFactor() - Method in class pulse.problem.schemes.Grid: Retrieves the value of the τ-factor, or the time factor, used in finite-difference calculation.
getTimeInterval() - Method in class pulse.problem.schemes.DifferenceScheme: The time interval is the number of discrete timesteps that will be discarded when storing the resulting solution into a HeatingCurve object, thus ensuring that only a limited set of points is stored.
getTimeLimit() - Method in class pulse.problem.schemes.DifferenceScheme: The time limit (in whatever units this DifferenceScheme uses to process the solution), which serves as the ultimate breakpoint for the calculations.
getTimeSequence() - Method in class pulse.AbstractData
getTimeSequence() - Method in class pulse.search.statistics.ResidualStatistic
getTimeShift() - Method in class pulse.HeatingCurve: The time shift is the position of the 'zero-time'.
getTimeStep() - Method in class pulse.problem.schemes.Grid: Retrieves the value of the τ time step used in finite-difference calculation.
getTimeStep() - Method in class pulse.problem.schemes.TridiagonalMatrixAlgorithm
getTimeThreshold() - Method in class pulse.problem.schemes.rte.dom.AdaptiveIntegrator
getTooltips() - Method in class pulse.ui.components.models.ResultTableModel
getTotalNodes() - Method in class pulse.problem.schemes.rte.dom.OrdinateSet
getTransform() - Method in class pulse.math.Parameter
getTransformedBounds() - Method in class pulse.math.Parameter: If transform of i is not null, applies the transformation to the component bounds
getTrapezoidalFall() - Method in class pulse.problem.laser.TrapezoidalPulse
getTrapezoidalRise() - Method in class pulse.problem.laser.TrapezoidalPulse
getTreeCellRendererComponent(JTree, Object, boolean, boolean, boolean, int, boolean) - Method in class pulse.ui.components.controllers.ProblemCellRenderer
getTridiagonalMatrixAlgorithm() - Method in class pulse.problem.schemes.ImplicitScheme
getType() - Method in class pulse.input.listeners.CurveEvent: Used to get the type of this event.
getType() - Method in class pulse.input.listeners.DataEvent: Used to get the type of this event.
getType() - Method in exception pulse.problem.schemes.solvers.SolverException
getType() - Method in class pulse.properties.Flag: Returns the type of this Flag.
getType() - Method in class pulse.properties.NumericProperty
getUpdateExecutor() - Method in class pulse.tasks.logs.AbstractLogger
getUpperBound() - Method in class pulse.input.IndexRange: Gets the integer value representing the index of the upper bound previously set by looking at a certain unspecified data list.
getUpperBound() - Method in class pulse.input.Range: Gets the numeric property defining the upper bound of this range.
getUpperLimitField() - Method in class pulse.ui.components.RangeTextFields
getValue() - Method in class pulse.properties.Flag: The value for this Property is a boolean.
getValue() - Method in class pulse.properties.NumericProperty
getValue() - Method in interface pulse.properties.Property: Retrieves the value of this Property.
getValue() - Method in class pulse.properties.SampleName
getValue() - Method in class pulse.util.DiscreteSelector
getValue() - Method in class pulse.util.ImmutableDataEntry: Gets the value object
getValue() - Method in class pulse.util.InstanceDescriptor
getValueAt(int, int) - Method in class pulse.ui.components.models.ParameterTableModel
getValueAt(int, int) - Method in class pulse.ui.components.models.SelectedKeysModel
getVelocity() - Method in class pulse.search.direction.pso.ParticleState
getVersionDate() - Method in class pulse.ui.Version
getVersionLabel() - Method in class pulse.ui.Version
getWeight() - Method in class pulse.problem.schemes.solvers.MixedCoupledSolver
getWeight(int) - Method in class pulse.problem.schemes.rte.dom.OrdinateSet
getWeights() - Method in class pulse.problem.schemes.rte.dom.CompositeGaussianQuadrature: The weights of the composite quadrature.
getWidthToleranceFactor() - Method in class pulse.problem.laser.DiscretePulse: Assuming a characteristic time is divided by the return value of this method and is set to the minimal resolved pulse width, shows how small a pulse width can be to enable finite pulse correction.
getWidthToleranceFactor() - Method in class pulse.problem.laser.DiscretePulse2D: A smaller tolerance factor is set for 2D calculations
getX() - Method in interface pulse.DiscreteInput
getX() - Method in class pulse.input.ExperimentalData
getX() - Method in class pulse.math.filters.OptimisablePolyline
getX() - Method in class pulse.problem.laser.NumericPulseData
getXStep() - Method in class pulse.problem.schemes.Grid: Retrieves the value of the h_x coordinate step used in finite-difference calculation.
getY() - Method in interface pulse.DiscreteInput
getY() - Method in class pulse.input.ExperimentalData
getY() - Method in class pulse.math.filters.OptimisablePolyline
getY() - Method in class pulse.problem.laser.NumericPulseData
getYStep() - Method in class pulse.problem.schemes.Grid2D
GLOBAL - Static variable in class pulse.search.direction.pso.StaticTopologies: Global best
GoldenSectionOptimiser - Class in pulse.search.linear: The golden-section search is a simple dichotomy search for finding the minimum of strictly unimodal functions by successively narrowing the domain of the search using the golden ratio partitioning.
gradient(GeneralTask) - Method in class pulse.search.direction.GradientBasedOptimiser: Calculates the Vector gradient of the target function (the sum of squared residuals, SSR, for this task.
GRADIENT_RESOLUTION - pulse.properties.NumericPropertyKeyword: The accuracy of gradient calculation.
GradientBasedOptimiser - Class in pulse.search.direction
GradientBasedOptimiser() - Constructor for class pulse.search.direction.GradientBasedOptimiser: Abstract constructor that sets up the default ITERATION_LIMIT, ERROR_TOLERANCE and GRADIENT_RESOLUTION for this PathSolver.
GradientGuidedPath - Class in pulse.search.direction: A Path stores information relevant to the selected PathSolver, which is related to a specific SearchTask.
GradientGuidedPath(GeneralTask) - Constructor for class pulse.search.direction.GradientGuidedPath
GraphicalLogPane - Class in pulse.ui.components
GraphicalLogPane() - Constructor for class pulse.ui.components.GraphicalLogPane
Grid - Class in pulse.problem.schemes: A Grid is used to partition the space and time domain of a Problem to allow a numeric solution with a DifferenceScheme.
Grid() - Constructor for class pulse.problem.schemes.Grid
Grid(NumericProperty, NumericProperty) - Constructor for class pulse.problem.schemes.Grid: Creates a Grid object with the specified gridDensity and timeFactor.
GRID_DENSITY - pulse.properties.NumericPropertyKeyword: Grid (space partitioning) density.
GRID_SCALING_FACTOR - pulse.properties.NumericPropertyKeyword: Grid scaling factor.
GRID_STRETCHING_FACTOR - pulse.properties.NumericPropertyKeyword: Grid stretching factor (RTE).
GRID_TOO_LARGE - pulse.problem.schemes.rte.RTECalculationStatus: The grid density required to reach the error threshold was too large.
Grid2D - Class in pulse.problem.schemes: A Grid2D is used to partition the space and time domain of a Problem2D to allow a numeric solution with a DifferenceScheme.
Grid2D() - Constructor for class pulse.problem.schemes.Grid2D
Grid2D(NumericProperty, NumericProperty) - Constructor for class pulse.problem.schemes.Grid2D: Creates a Grid2D where the radial and axial spatial steps are equal to the inverse gridDensity.
gridAxialDistance(double, double) - Method in class pulse.problem.schemes.Grid: The dimensionless axial distance on this Grid, which is the distance/lengthFactor rounded up to a factor of the coordinate step hx.
gridRadialDistance(double, double) - Method in class pulse.problem.schemes.Grid2D: The dimensionless radial distance on this Grid2D, which is the radial/lengthFactor rounded up to a factor of the coordinate step hy.
gridTime(double, double) - Method in class pulse.problem.schemes.Grid: The dimensionless time on this Grid, which is the time/dimensionFactor rounded up to a factor of the time step tau.
group(List<AbstractResult>, AbstractResult, double) - Method in class pulse.ui.components.models.ResultTableModel: Takes a list of results, which should be mandatory sorted in the order of ascending id values, and searches for those results that can be merged with r, satisfying these criteria: (a) these results correspond to test temperatures within a specified temperatureDelta (b) they form a single sequence of measurements
Group - Class in pulse.util
Group() - Constructor for class pulse.util.Group

H

HalfTimeCalculator - Class in pulse.math.filters
HalfTimeCalculator(DiscreteInput) - Constructor for class pulse.math.filters.HalfTimeCalculator
HAMMING - Static variable in interface pulse.math.Window
HANN - Static variable in interface pulse.math.Window
HANN_POISSON - Static variable in interface pulse.math.Window
Harmonic - Class in pulse.math: Harmonic class.
Harmonic() - Constructor for class pulse.math.Harmonic
Harmonic(double, double, double) - Constructor for class pulse.math.Harmonic
Harmonic(Harmonic) - Constructor for class pulse.math.Harmonic
hasEnoughElements(int) - Method in class pulse.ui.components.ResultTable
hashCode() - Method in class pulse.math.ParameterIdentifier
hashCode() - Method in class pulse.properties.SampleName
hashCode() - Method in class pulse.search.statistics.ModelSelectionCriterion
hashCode() - Method in class pulse.search.statistics.ResidualStatistic
hashCode() - Method in class pulse.tasks.Calculation
hashCode() - Method in class pulse.util.ImmutablePair
hasZeroNode() - Method in class pulse.problem.schemes.rte.dom.OrdinateSet
HEAT_CAPACITY - pulse.ui.components.buttons.LoaderButton.DataType
HEAT_LOSS - pulse.properties.NumericPropertyKeyword: The coefficient of heat losses from the front and rear surfaces of the sample (1D and 2D problems).
HEAT_LOSS_COMBINED - pulse.properties.NumericPropertyKeyword: A directive for the optimiser to maintain equal heat losses on all surfaces of the sample.
HEAT_LOSS_CONVECTIVE - pulse.properties.NumericPropertyKeyword: The convective heat loss in diathermic and participating medium problems.
HEAT_LOSS_GAS - pulse.properties.NumericPropertyKeyword: Heat loss for the gas in the 2T-model.
HEAT_LOSS_SIDE - pulse.properties.NumericPropertyKeyword: The coefficient of heat losses from the side surface of the sample (two-dimensional problems).
HeatingCurve - Class in pulse: The HeatingCurve represents a time-temperature profile (a AbstractData instance) generated using a calculation algorithm implemented by a Problem's Solver.
HeatingCurve() - Constructor for class pulse.HeatingCurve: Calls the super-constructor and initialises the baseline-corrected signal list.
HeatingCurve(List<Double>, List<Double>, double, String) - Constructor for class pulse.HeatingCurve
HeatingCurve(HeatingCurve) - Constructor for class pulse.HeatingCurve: Copy constructor.
HeatingCurve(NumericProperty) - Constructor for class pulse.HeatingCurve: Creates a HeatingCurve, where the number of elements in the time, signal, and adjustedSignal collections are set to count.getValue().
HeatingCurveListener - Interface in pulse: An interface used to listen to data events related to HeatingCurve.
HEIGHT_FACTOR - Static variable in class pulse.ui.components.LogChart
Helium - Class in pulse.problem.statements.model
Helium() - Constructor for class pulse.problem.statements.model.Helium
HenyeyGreensteinPF - Class in pulse.problem.schemes.rte.dom: The single-parameter Henyey-Greenstein scattering phase function.
HenyeyGreensteinPF(ThermoOpticalProperties, Discretisation) - Constructor for class pulse.problem.schemes.rte.dom.HenyeyGreensteinPF
HermiteInterpolator - Class in pulse.problem.schemes.rte.dom: A globally C¹ Hermite interpolator used to interpolate intensities and derivatives in discrete ordinates method when solving the radiative transfer equation with a Runge-Kutta solver (either implicit or explicit).
HermiteInterpolator() - Constructor for class pulse.problem.schemes.rte.dom.HermiteInterpolator
HessianDirectionSolver - Interface in pulse.search.direction
HH - Variable in class pulse.problem.schemes.solvers.ImplicitLinearisedSolver
HierarchyListener - Interface in pulse.util: An hierarchy listener, which listens to any changes happening with the children of an UpwardsNavigable.
HIGH - pulse.problem.statements.ProblemComplexity
HIGHEST_ORDER - Static variable in class pulse.problem.schemes.rte.exact.ExponentialIntegrals
highlight(boolean) - Method in class pulse.ui.components.buttons.LoaderButton
highlightButtons(boolean) - Method in class pulse.ui.components.panels.ProblemToolbar
highlightIfNeeded() - Method in class pulse.ui.components.buttons.LoaderButton
HistogramFrame - Class in pulse.ui.frames
HistogramFrame(AuxPlotter<ResidualStatistic>, int, int) - Constructor for class pulse.ui.frames.HistogramFrame
HTML - pulse.io.export.Extension: The result will be a document with html tags that can be viewed in any web browser.

I

IconCheckBox - Class in pulse.ui.components.buttons
IconCheckBox() - Constructor for class pulse.ui.components.buttons.IconCheckBox
IconCheckBox(boolean) - Constructor for class pulse.ui.components.buttons.IconCheckBox
identifier() - Method in class pulse.properties.Flag
identifier() - Method in interface pulse.properties.Property
identifier() - Method in class pulse.util.InstanceDescriptor
Identifier - Class in pulse.tasks: An Identifier is used to identify SearchTasks.
Identifier() - Constructor for class pulse.tasks.Identifier: Creates an Identifier by incrementing the previously recorded ID.
IDENTIFIER - pulse.properties.NumericPropertyKeyword: Task identifier.
identify() - Method in class pulse.input.Metadata
identify() - Method in class pulse.util.UpwardsNavigable: Retrieves the Identifier of the SearchTaks this UpwardsNavigable belongs to.
identifySelection(SearchTask) - Method in class pulse.ui.components.CalculationTable
IDLE - pulse.ui.components.MovableValueMarker.State
IDLE_STROKE - Static variable in class pulse.ui.components.MovableValueMarker
ignoreSiblings() - Method in class pulse.AbstractData
ignoreSiblings() - Method in class pulse.problem.schemes.rte.exact.NewtonCotesQuadrature
ignoreSiblings() - Method in class pulse.problem.schemes.rte.RadiativeTransferSolver
ignoreSiblings() - Method in class pulse.search.direction.PathOptimiser
ignoreSiblings() - Method in class pulse.util.PropertyHolder: Should Accessibles that belong to this PropertyHolder be ignored when this PropertyHolder is displayed in a table?
ILLEGAL_PARAMETERS - pulse.problem.schemes.solvers.SolverException.SolverExceptionType
ImageUtils - Class in pulse.util
ImmutableDataEntry<T,R> - Class in pulse.util: A DataEntry is an immutable ordered pair of an instance of T, which is considered to be the 'key', and an instance of R, which is considered to be the 'value'.
ImmutableDataEntry(T, R) - Constructor for class pulse.util.ImmutableDataEntry: Constructs a new DataEntry from key and value.
ImmutablePair<T> - Class in pulse.util
ImmutablePair(T, T) - Constructor for class pulse.util.ImmutablePair
ImplicitCoupledSolver - Class in pulse.problem.schemes.solvers
ImplicitCoupledSolver() - Constructor for class pulse.problem.schemes.solvers.ImplicitCoupledSolver
ImplicitCoupledSolver(NumericProperty, NumericProperty, NumericProperty) - Constructor for class pulse.problem.schemes.solvers.ImplicitCoupledSolver
ImplicitCoupledSolverNL - Class in pulse.problem.schemes.solvers
ImplicitCoupledSolverNL() - Constructor for class pulse.problem.schemes.solvers.ImplicitCoupledSolverNL
ImplicitCoupledSolverNL(NumericProperty, NumericProperty, NumericProperty) - Constructor for class pulse.problem.schemes.solvers.ImplicitCoupledSolverNL
ImplicitDiathermicSolver - Class in pulse.problem.schemes.solvers
ImplicitDiathermicSolver() - Constructor for class pulse.problem.schemes.solvers.ImplicitDiathermicSolver
ImplicitDiathermicSolver(NumericProperty, NumericProperty) - Constructor for class pulse.problem.schemes.solvers.ImplicitDiathermicSolver
ImplicitDiathermicSolver(NumericProperty, NumericProperty, NumericProperty) - Constructor for class pulse.problem.schemes.solvers.ImplicitDiathermicSolver
ImplicitLinearisedSolver<T extends ClassicalProblem> - Class in pulse.problem.schemes.solvers: Performs a fully-dimensionless calculation for the LinearisedProblem.
ImplicitLinearisedSolver() - Constructor for class pulse.problem.schemes.solvers.ImplicitLinearisedSolver
ImplicitLinearisedSolver(NumericProperty, NumericProperty) - Constructor for class pulse.problem.schemes.solvers.ImplicitLinearisedSolver
ImplicitLinearisedSolver(NumericProperty, NumericProperty, NumericProperty) - Constructor for class pulse.problem.schemes.solvers.ImplicitLinearisedSolver
ImplicitNonlinearSolver - Class in pulse.problem.schemes.solvers
ImplicitNonlinearSolver() - Constructor for class pulse.problem.schemes.solvers.ImplicitNonlinearSolver
ImplicitNonlinearSolver(NumericProperty, NumericProperty) - Constructor for class pulse.problem.schemes.solvers.ImplicitNonlinearSolver
ImplicitNonlinearSolver(NumericProperty, NumericProperty, NumericProperty) - Constructor for class pulse.problem.schemes.solvers.ImplicitNonlinearSolver
ImplicitScheme - Class in pulse.problem.schemes: An abstract implicit finite-difference scheme for solving one-dimensional heat conduction problems.
ImplicitScheme() - Constructor for class pulse.problem.schemes.ImplicitScheme: Constructs a default fully-implicit scheme using the default values of GRID_DENSITY and TAU_FACTOR.
ImplicitScheme(NumericProperty, NumericProperty) - Constructor for class pulse.problem.schemes.ImplicitScheme: Constructs a fully-implicit scheme on a one-dimensional grid that is specified by the values N and timeFactor.
ImplicitScheme(NumericProperty, NumericProperty, NumericProperty) - Constructor for class pulse.problem.schemes.ImplicitScheme: Constructs a fully-implicit scheme on a one-dimensional grid that is specified by the values N and timeFactor.
ImplicitTranslucentSolver - Class in pulse.problem.schemes.solvers
ImplicitTranslucentSolver() - Constructor for class pulse.problem.schemes.solvers.ImplicitTranslucentSolver
ImplicitTranslucentSolver(NumericProperty, NumericProperty, NumericProperty) - Constructor for class pulse.problem.schemes.solvers.ImplicitTranslucentSolver
ImplicitTwoTemperatureSolver - Class in pulse.problem.schemes.solvers
ImplicitTwoTemperatureSolver() - Constructor for class pulse.problem.schemes.solvers.ImplicitTwoTemperatureSolver
ImplicitTwoTemperatureSolver(NumericProperty, NumericProperty, NumericProperty) - Constructor for class pulse.problem.schemes.solvers.ImplicitTwoTemperatureSolver
IN_PROGRESS - pulse.tasks.logs.Status: The task is being executed.
INCIDENT_INTENSITY - pulse.properties.NumericPropertyKeyword: Intensity of incident radiation.
incidentRadation(int) - Method in class pulse.problem.schemes.rte.dom.Discretisation: Calculates the incident radiation $∑$ _iw_i I_ij, which is the zeroth moment of the intensities.
incidentRadiation(int, int, int) - Method in class pulse.problem.schemes.rte.dom.Discretisation: Calculates the incident radiation $∑$ _iw_i I_ij, by performing simple summation for node points between startInclusive and endExclusive.
INCOMPATIBLE_OPTIMISER - pulse.tasks.logs.Details: The optimisation statistic is not suported by the selected optimiser.
INCOMPLETE - pulse.tasks.logs.Status: Not all necessary details have been uploaded to a SearchTask and that it cannot be executed yet.
increaseAmplitudeBy(int) - Method in class pulse.math.Harmonic
incrementCount() - Method in class pulse.AbstractData
incrementFailedAttempts() - Method in class pulse.search.direction.IterativeState
incrementProgress() - Method in class pulse.ui.frames.dialogs.ProgressDialog
incrementStep() - Method in class pulse.search.direction.IterativeState
indexOf(NumericPropertyKeyword) - Method in class pulse.tasks.processing.ResultFormat
indexOfTask(SearchTask) - Method in class pulse.tasks.TaskManager
IndexRange - Class in pulse.input: Provides a way to define the indices corresponding to a certain range of data.
IndexRange(int, int) - Constructor for class pulse.input.IndexRange
IndexRange(List<Double>, Range) - Constructor for class pulse.input.IndexRange: Constructs a new index range for data based on the dimensional range.
IndexRange(IndexRange) - Constructor for class pulse.input.IndexRange
inflate(SearchTask) - Method in class pulse.tasks.processing.CorrelationBuffer
init() - Method in class pulse.problem.laser.DiscretePulse: Recalculates the discretePulseWidth by calling gridTime on the physical pulse width and timeFactor.
init() - Method in class pulse.problem.schemes.rte.Fluxes
init() - Method in class pulse.problem.schemes.rte.FluxesAndExplicitDerivatives
init() - Static method in class pulse.search.statistics.CorrelationTest
init() - Method in class pulse.tasks.processing.Buffer
init() - Method in class pulse.ui.components.buttons.LoaderButton
init() - Method in class pulse.ui.components.TaskBox
init(int, int) - Method in class pulse.problem.schemes.rte.dom.DiscreteQuantities
init(ExperimentalData, DiscretePulse) - Method in class pulse.problem.laser.NumericPulse: Defines the pulse width as the last element of the time sequence contained in NumericPulseData.
init(ExperimentalData, DiscretePulse) - Method in class pulse.problem.laser.PulseTemporalShape: Stores the pulse width from pulse and initialises area integration.
init(ThermoOpticalProperties) - Method in class pulse.problem.schemes.rte.dom.CornetteSchanksPF
init(ThermoOpticalProperties) - Method in class pulse.problem.schemes.rte.dom.HenyeyGreensteinPF
init(ThermoOpticalProperties) - Method in class pulse.problem.schemes.rte.dom.LinearAnisotropicPF
init(ThermoOpticalProperties) - Method in class pulse.problem.schemes.rte.dom.PhaseFunction
init(NonlinearProblem) - Method in class pulse.problem.schemes.rte.dom.ODEIntegrator
init(ParticipatingMedium, Grid) - Method in class pulse.problem.schemes.RadiativeTransferCoupling
init(ParticipatingMedium, Grid) - Method in class pulse.problem.schemes.rte.dom.DiscreteOrdinatesMethod
init(ParticipatingMedium, Grid) - Method in class pulse.problem.schemes.rte.exact.NonscatteringRadiativeTransfer
init(ParticipatingMedium, Grid) - Method in class pulse.problem.schemes.rte.RadiativeTransferSolver: Retrieves the parameters from p and grid needed to run the calculations.Resets the flux arrays.
initComponents() - Method in class pulse.ui.components.panels.ChartToolbar
initComponents() - Method in class pulse.ui.components.panels.LogToolbar
initComponents() - Method in class pulse.ui.components.panels.OpacitySlider
initComponents() - Method in class pulse.ui.components.panels.ResultToolbar
initComponents(JTable, String, JTable, String) - Method in class pulse.ui.components.panels.DoubleTablePanel
initCorrelationTest() - Method in class pulse.tasks.SearchTask
initFrom(DifferenceScheme) - Method in class pulse.problem.schemes.DifferenceScheme
initFrom(Pulse) - Method in class pulse.problem.statements.Pulse
initFrom(Pulse) - Method in class pulse.problem.statements.Pulse2D
initListeners() - Method in class pulse.HeatingCurve
initListeners() - Method in class pulse.input.ExperimentalData
initListeners() - Method in class pulse.problem.statements.Pulse
initListeners() - Method in class pulse.tasks.logs.Log
initListeners() - Method in class pulse.tasks.SearchTask
initListeners() - Method in class pulse.tasks.TaskManager
initListeners() - Method in class pulse.ui.components.CalculationTable
initListeners() - Method in class pulse.ui.components.TaskTable
initListeners() - Method in class pulse.util.PropertyHolder
initListeners() - Method in class pulse.util.UpwardsNavigable
initModelCriterion(Statistic) - Method in class pulse.tasks.Calculation
initNormalityTest() - Method in class pulse.tasks.SearchTask
initOptimiser() - Method in class pulse.tasks.Calculation
initProperties() - Method in class pulse.problem.statements.ClassicalProblem
initProperties() - Method in class pulse.problem.statements.ClassicalProblem2D
initProperties() - Method in class pulse.problem.statements.DiathermicMedium
initProperties() - Method in class pulse.problem.statements.ParticipatingMedium
initProperties() - Method in class pulse.problem.statements.Problem
initProperties() - Method in class pulse.problem.statements.TwoTemperatureModel
initProperties(ThermalProperties) - Method in class pulse.problem.statements.ClassicalProblem
initProperties(ThermalProperties) - Method in class pulse.problem.statements.ClassicalProblem2D
initProperties(ThermalProperties) - Method in class pulse.problem.statements.DiathermicMedium
initProperties(ThermalProperties) - Method in class pulse.problem.statements.ParticipatingMedium
initProperties(ThermalProperties) - Method in class pulse.problem.statements.Problem
initProperties(ThermalProperties) - Method in class pulse.problem.statements.TwoTemperatureModel
initState(GeneralTask) - Method in class pulse.search.direction.CompositePathOptimiser: Creates a new Path instance for storing the gradient, direction, and minimum point for this PathSolver.
initState(GeneralTask) - Method in class pulse.search.direction.LMOptimiser
initState(GeneralTask) - Method in class pulse.search.direction.PathOptimiser: Creates a new Path suitable for this PathSolver
initState(GeneralTask) - Method in class pulse.search.direction.pso.ParticleSwarmOptimiser
initState(GeneralTask) - Method in class pulse.search.direction.SteepestDescentOptimiser: Creates a new Path instance for storing the gradient, direction, and minimum point for this PathSolver.
InstanceCellEditor - Class in pulse.ui.components.controllers
InstanceCellEditor(InstanceDescriptor<?>) - Constructor for class pulse.ui.components.controllers.InstanceCellEditor
InstanceDescriptor<T extends Reflexive> - Class in pulse.util
InstanceDescriptor(Class<T>, Object...) - Constructor for class pulse.util.InstanceDescriptor
InstanceDescriptor(String, Class<T>, Object...) - Constructor for class pulse.util.InstanceDescriptor
instancesOf(Class<T>) - Static method in interface pulse.util.Reflexive: Uses the ReflexiveFinder to create a list of simple instance of reflexiveType generated by any classes listed in the same package where the reflexiveType is found.
instancesOf(Class<T>, Object...) - Static method in interface pulse.util.Reflexive
instancesOf(Class<T>, String) - Static method in interface pulse.util.Reflexive
instancesOf(Class<T>, String, Object...) - Static method in interface pulse.util.Reflexive: Uses the ReflexiveFinder to create a list of simple instance of reflexiveType generated by any classes listed in the package pckgname.
instantiate(Class<T>, String) - Static method in interface pulse.util.Reflexive
INSUFFICIENT_DATA_IN_PROBLEM_STATEMENT - pulse.tasks.logs.Details: Some data is missing in the problem statement.
Insulator - Class in pulse.problem.statements.model
Insulator() - Constructor for class pulse.problem.statements.model.Insulator
Insulator(AbsorptionModel) - Constructor for class pulse.problem.statements.model.Insulator
integrand(double...) - Method in class pulse.math.AbstractIntegrator: Calculates the integrand function.
integrand(double...) - Method in class pulse.problem.schemes.rte.exact.CompositionProduct: Evaluates the integrand f(x) E_n (α + β x) dx}.
integrate() - Method in class pulse.math.AbstractIntegrator: Calculates the definite integral within the specified integration bounds.
integrate() - Method in class pulse.math.MidpointIntegrator: Performs the integration according to the midpoint scheme.
integrate() - Method in class pulse.math.SimpsonIntegrator: Performs the integration with the Simpson's rule.
integrate() - Method in class pulse.problem.schemes.rte.dom.AdaptiveIntegrator
integrate() - Method in class pulse.problem.schemes.rte.dom.ODEIntegrator
integrate() - Method in class pulse.problem.schemes.rte.dom.TRBDF2
integrate() - Method in class pulse.problem.schemes.rte.exact.ChandrasekharsQuadrature
integrate() - Method in class pulse.problem.schemes.rte.exact.NewtonCotesQuadrature: Uses the Newton-Cotes integrator (by default, the Simpson's rule) to evaluate the composition product.
INTEGRATION_CUTOFF - pulse.properties.NumericPropertyKeyword: Cutoff for numeric integration.
INTEGRATION_SEGMENTS - pulse.properties.NumericPropertyKeyword: Number of subdivisions for numeric integration.
INTEGRATOR_TIMEOUT - pulse.problem.schemes.rte.RTECalculationStatus: The integrator took too long to finish.
intensitiesLeftBoundary(BlackbodySpectrum) - Method in class pulse.problem.schemes.rte.dom.Discretisation: Calculates the reflected intensity (positive angles, first half of indices) at the left boundary (τ = 0).
intensitiesRightBoundary(BlackbodySpectrum) - Method in class pulse.problem.schemes.rte.dom.Discretisation: Calculates the reflected intensity (negative angles, second half of indices) at the right boundary (τ = τ₀).
intermediateProcessing() - Method in class pulse.search.GeneralTask: Override this to add intermediate processing of results e.g.
intermediateProcessing() - Method in class pulse.tasks.SearchTask
InternalGraphFrame<T> - Class in pulse.ui.frames
InternalGraphFrame(String, AuxPlotter<T>) - Constructor for class pulse.ui.frames.InternalGraphFrame
interpolate(double) - Method in class pulse.problem.schemes.rte.dom.HermiteInterpolator: Interpolates the function at x
interpolateAt(double) - Method in class pulse.input.InterpolationDataset: Provides an interpolated value at key based on the available data in the DataEntry List.
interpolateOnExternalGrid(int, AdaptiveIntegrator) - Method in class pulse.problem.schemes.rte.dom.HermiteInterpolator: Interpolates intensities and their derivatives w.r.t.
interpolateSignalAt(double) - Method in class pulse.HeatingCurve
interpolateTemperatureProfile(double[]) - Method in class pulse.problem.schemes.rte.RadiativeTransferSolver: Performs interpolation with natural cubic splines using the input arguments.
InterpolationDataset - Class in pulse.input: An InterpolationDataset stores data in a List of DataEntry<Double,Double> objects (each containing a 'key' and a 'value') and provides means to interpolate between the 'values' using the 'keys'.
InterpolationDataset() - Constructor for class pulse.input.InterpolationDataset: Creates an empty InterpolationDataset.
INVALID_FLUXES - pulse.problem.schemes.rte.RTECalculationStatus: The radiative fluxes contain illegal values.
InvDiamTransform - Class in pulse.math.transforms: A transform that simply divides the value by the squared length of the sample.
InvDiamTransform(ExtendedThermalProperties) - Constructor for class pulse.math.transforms.InvDiamTransform
inverse() - Method in class pulse.math.linear.SquareMatrix: Conducts matrix inversion with the procedural EJML approach.
inverse(double) - Method in class pulse.math.transforms.AtanhTransform
inverse(double) - Method in class pulse.math.transforms.InvDiamTransform
inverse(double) - Method in class pulse.math.transforms.PeriodicTransform
inverse(double) - Method in class pulse.math.transforms.StickTransform
inverse(double) - Method in interface pulse.math.transforms.Transformable: Inverses the transform.
inverseTransform() - Method in class pulse.math.Parameter
inverted() - Method in class pulse.math.linear.Vector: Creates a new Vector based on this one, all elements of which are inverted, i.e.
inwardPartialSum(int, double[], int, int) - Method in class pulse.problem.schemes.rte.dom.PhaseFunction
isAcquisitionTimeSensible() - Method in class pulse.input.ExperimentalData: Checks if the acquisition time used to collect this ExperimentalData is sensible.
isAutoUpdateFluxes() - Method in class pulse.problem.schemes.CoupledImplicitScheme
isAutoUpdateFluxes() - Method in class pulse.problem.schemes.solvers.ExplicitCoupledSolver
isBetterThan(ParticleState) - Method in class pulse.search.direction.pso.ParticleState
isBetterThan(Calculation) - Method in class pulse.tasks.Calculation: Checks if this Calculation is better than a.
isCellEditable(int, int) - Method in class pulse.ui.components.models.ResultTableModel
isDefaultSearchVariable() - Method in class pulse.properties.NumericProperty
isDimensionConverted() - Method in class pulse.properties.NumericPropertyFormatter
isDiscrete() - Method in class pulse.properties.NumericProperty
isDiscrete(NumericPropertyKeyword) - Static method in class pulse.properties.NumericProperties
isDrawSmooth() - Method in class pulse.ui.frames.PreviewFrame
isEmpty() - Method in class pulse.tasks.logs.AbstractLogger
isEmpty() - Method in class pulse.ui.components.GraphicalLogPane
isEmpty() - Method in class pulse.ui.components.TextLogPane
isEnabled() - Method in class pulse.problem.statements.Problem: Used for debugging.
isErrorTooHigh(double) - Method in class pulse.tasks.processing.Buffer: Determines whether the relative error (variance divided by mean) for any of the properties in this buffer is higher than the expect errorTolerance.
isExtensionSupported(File) - Method in interface pulse.io.readers.AbstractHandler: Invokes extensionMatch with the second argument set as getSupportedExtension().
isFinished() - Method in class pulse.tasks.logs.Log
isFirstRun() - Method in class pulse.problem.schemes.rte.dom.AdaptiveIntegrator
isFSAL() - Method in class pulse.problem.schemes.rte.dom.ButcherTableau
isFull() - Method in class pulse.AbstractData
isGraphicalLog() - Static method in class pulse.tasks.logs.Log: Checks whether this Log is verbose.
isInProgress() - Method in class pulse.search.GeneralTask
isInProgress() - Method in class pulse.search.SimpleOptimisationTask
isInProgress() - Method in class pulse.tasks.SearchTask
isListedNumericType(NumericPropertyKeyword) - Method in class pulse.util.PropertyHolder
isListedParameter(Property) - Method in class pulse.util.PropertyHolder: Checks whether p, which is either a generic or a numeric property, is listed as as parameter for this PropertyHolder.
isOptimisable() - Method in class pulse.properties.NumericProperty
isPositiveDefinite() - Method in class pulse.math.linear.SquareMatrix: Checks if a matrix is positive definite.
isReady() - Method in class pulse.problem.statements.ClassicalProblem
isReady() - Method in class pulse.problem.statements.ClassicalProblem2D
isReady() - Method in class pulse.problem.statements.NonlinearProblem
isReady() - Method in class pulse.problem.statements.Problem
isResidualsShown() - Method in class pulse.ui.components.Chart
isSelectionEmpty() - Method in class pulse.ui.components.ResultTable
isSingleStatement() - Method in class pulse.tasks.TaskManager: Checks whether changes in this PropertyHolder should automatically be accounted for by other instances of this class.
isStarted() - Method in class pulse.tasks.logs.Log: Checks whether this Log has observed a TaskStateEvent triggered by a change of status of its respective SearchTask to IN_PROGRESS.
isTaskQueueEmpty() - Method in class pulse.tasks.TaskManager: Checks if any of the tasks that this TaskManager manages is either QUEUED or IN_PROGRESS.
isValid() - Method in class pulse.input.IndexRange: Checks if this index range is viable.
isValueSensible(NumericProperty, Number) - Static method in class pulse.properties.NumericProperties: Checks whether the val that is going to be passed to the property (a) has the same type as the property.getValue() object; (b) is confined within the definition domain: minimum <= value <= maximum.
isVisibleByDefault() - Method in class pulse.properties.NumericProperty
isZeroApproximationShown() - Method in class pulse.ui.components.Chart
iteration(int) - Method in interface pulse.problem.schemes.FixedPointIterations: Performs an iteration at time m
iteration(int) - Method in class pulse.problem.schemes.solvers.ExplicitCoupledSolverNL
iteration(int) - Method in class pulse.problem.schemes.solvers.ExplicitNonlinearSolver
iteration(int) - Method in class pulse.problem.schemes.solvers.ImplicitCoupledSolverNL
iteration(int) - Method in class pulse.problem.schemes.solvers.ImplicitNonlinearSolver
iteration(int) - Method in class pulse.problem.schemes.solvers.ImplicitTwoTemperatureSolver
iteration(int) - Method in class pulse.problem.schemes.solvers.MixedCoupledSolverNL
iteration(GeneralTask) - Method in class pulse.search.direction.CompositePathOptimiser
iteration(GeneralTask) - Method in class pulse.search.direction.LMOptimiser
iteration(GeneralTask) - Method in class pulse.search.direction.PathOptimiser: This method sets out the basic algorithm for estimating the minimum of the target function, which is defined as the sum of squared residuals (SSR), or the deviations of the model solution (a DifferenceScheme used to solve the Problem for this task) from the empirical values (the ExperimentalData).
iteration(GeneralTask) - Method in class pulse.search.direction.pso.ParticleSwarmOptimiser: Iterates the swarm.
ITERATION - pulse.properties.NumericPropertyKeyword: Search iteration.
ITERATION_LIMIT - pulse.properties.NumericPropertyKeyword: Iteration limit for reverse problem solution.
ITERATION_LIMIT_REACHED - pulse.problem.schemes.rte.RTECalculationStatus: The iterative solver took too long to finish.
IterativeSolver - Class in pulse.problem.schemes.rte.dom: Used to iteratively solve the radiative transfer problem.
IterativeSolver() - Constructor for class pulse.problem.schemes.rte.dom.IterativeSolver: Constructs an IterativeSolver with the default thresholds for iteration error and number of iterations.
IterativeState - Class in pulse.search.direction
IterativeState() - Constructor for class pulse.search.direction.IterativeState
IterativeState(IterativeState) - Constructor for class pulse.search.direction.IterativeState: Stores the parameter vector and cost function value associated with the specified state.
IterativeState(GeneralTask) - Constructor for class pulse.search.direction.IterativeState

J

jacobian(GeneralTask) - Method in class pulse.search.direction.LMOptimiser: Calculates the Jacobian of the model function given as a discrete set of time-signal values.

K

KSTest - Class in pulse.search.statistics: The Kolmogorov-Smirnov normality test as implemented in ApacheCommonsMath.
KSTest() - Constructor for class pulse.search.statistics.KSTest

L

LAGUERRE_SOLVER_ERROR - pulse.properties.NumericPropertyKeyword: Error tolerance for the Laguerre solver (RTE).
LASER - pulse.problem.statements.model.SpectralRange
LASER_ABSORPTIVITY - pulse.properties.NumericPropertyKeyword: Dimensionless coefficient of laser energy absorption (γ₀).
LASER_ENERGY - pulse.properties.NumericPropertyKeyword: Absorbed energy (nonlinear problems).
laserPowerAt(double) - Method in class pulse.problem.laser.DiscretePulse: Uses the PulseTemporalShape of the Pulse object to calculate the laser power at the specified moment of time.
laserPowerAt(double) - Method in class pulse.problem.laser.DiscretePulse2D: Calculates the laser power at a give moment in time.
lastEntry() - Method in class pulse.tasks.logs.Log: Finds the last recorded entry in this Log.
Launcher - Class in pulse.ui: This is the main class used to launch PULsE and start the GUI.
leftBoundary(int) - Method in class pulse.problem.schemes.ImplicitScheme
leftBoundary(int) - Method in class pulse.problem.schemes.solvers.ImplicitDiathermicSolver
LegendrePoly - Class in pulse.math: A utility class represents the Legendre polynomial of a given order.
LegendrePoly(int) - Constructor for class pulse.math.LegendrePoly: Creates a Legendre polynomial of the order n.
length() - Method in class pulse.math.linear.Vector: Calculates the length, which is represented by the square-root of the squared length.
length() - Method in class pulse.math.Segment: Calculates the length (b - a)
lengthSq() - Method in class pulse.math.linear.Vector: The squared length of this vector is the dot product of this vector by itself.
lengthSq() - Method in class pulse.math.Segment: Calculates the squared length
LFRReader - Class in pulse.io.readers: A CurveReader capable of reading ASCII master-files generated by the Linseis software.
LINEAR_RESOLUTION - pulse.properties.NumericPropertyKeyword: The resolution of linear search.
LinearAnisotropicPF - Class in pulse.problem.schemes.rte.dom: The linear-anisotropic scattering phase function.
LinearAnisotropicPF(ThermoOpticalProperties, Discretisation) - Constructor for class pulse.problem.schemes.rte.dom.LinearAnisotropicPF
LinearBaseline - Class in pulse.baseline: A linear Baseline which specifies the intercept and slope parameters.
LinearBaseline() - Constructor for class pulse.baseline.LinearBaseline: A primitive constructor, which initialises a CONSTANT baseline with zero intercept and slope.
LinearBaseline(double, double) - Constructor for class pulse.baseline.LinearBaseline
LinearBaseline(AdjustableBaseline) - Constructor for class pulse.baseline.LinearBaseline
linearExtrapolation(double[], double[], double) - Static method in class pulse.math.MathUtils: Performs linear extrapolation according to the rule y(xStar) = y1 + (xStar - x1)/(x2 - x1) * (y2 - y1)
LinearOptimiser - Class in pulse.search.linear: The most basic LinearSolver class, which defines the notion of the linear resolution, defines the method signature for estimating the step of the linear search (i.e., the position of the minimum), and provides a simple algorithm to initialise the calculation domain.
LinearOptimiser() - Constructor for class pulse.search.linear.LinearOptimiser
linearStep(GeneralTask) - Method in class pulse.search.linear.GoldenSectionOptimiser: Let a and b be the start and end point of a Segment, initially defined by the super.domain(IndexedVector,Vector) method.
linearStep(GeneralTask) - Method in class pulse.search.linear.LinearOptimiser: Finds the minimum of the target function on the domain Segment.
linearStep(GeneralTask) - Method in class pulse.search.linear.WolfeOptimiser: This uses a combination of the Wolfe conditions for conducting an inexact line search with the domain partitioning using a random number generator.
listedKeywords() - Method in class pulse.AbstractData: Lists NUM_POINTS as an accessible property of this PropertyHolder.
listedKeywords() - Method in class pulse.baseline.AdjustableBaseline: Lists the intercept as accessible property for this FlatBaseline.
listedKeywords() - Method in class pulse.baseline.LinearBaseline
listedKeywords() - Method in class pulse.baseline.SinusoidalBaseline
listedKeywords() - Method in class pulse.HeatingCurve
listedKeywords() - Method in class pulse.input.Metadata
listedKeywords() - Method in class pulse.input.Range: Lists lower and upper bounds as properties.
listedKeywords() - Method in class pulse.math.FixedIntervalIntegrator: The listed property is INTEGRATION_SEGMENTS.
listedKeywords() - Method in class pulse.math.Harmonic: Listed properties include the frequency, amplitude, phase shift, and intercept.
listedKeywords() - Method in class pulse.problem.laser.ExponentiallyModifiedGaussian
listedKeywords() - Method in class pulse.problem.laser.TrapezoidalPulse
listedKeywords() - Method in class pulse.problem.schemes.CoupledImplicitScheme
listedKeywords() - Method in class pulse.problem.schemes.DifferenceScheme: The superclass only lists the TIME_LIMIT property.
listedKeywords() - Method in class pulse.problem.schemes.Grid: The listed properties include GRID_DENSITY and TAU_FACTOR.
listedKeywords() - Method in class pulse.problem.schemes.rte.dom.AdaptiveIntegrator
listedKeywords() - Method in class pulse.problem.schemes.rte.dom.IterativeSolver
listedKeywords() - Method in class pulse.problem.schemes.rte.dom.StretchedGrid
listedKeywords() - Method in class pulse.problem.schemes.rte.dom.SuccessiveOverrelaxation
listedKeywords() - Method in class pulse.problem.schemes.rte.exact.ChandrasekharsQuadrature
listedKeywords() - Method in class pulse.problem.schemes.rte.exact.NewtonCotesQuadrature
listedKeywords() - Method in class pulse.problem.schemes.solvers.ImplicitNonlinearSolver
listedKeywords() - Method in class pulse.problem.schemes.solvers.ImplicitTwoTemperatureSolver
listedKeywords() - Method in class pulse.problem.schemes.solvers.MixedCoupledSolver
listedKeywords() - Method in class pulse.problem.statements.ClassicalProblem
listedKeywords() - Method in class pulse.problem.statements.model.AbsorptionModel
listedKeywords() - Method in class pulse.problem.statements.model.DiathermicProperties
listedKeywords() - Method in class pulse.problem.statements.model.ExtendedThermalProperties
listedKeywords() - Method in class pulse.problem.statements.model.Insulator
listedKeywords() - Method in class pulse.problem.statements.model.ThermalProperties: Listed parameters include: MAXTEMP, DIFFUSIVITY, THICKNESS, HEAT_LOSS_FRONT, HEAT_LOSS_REAR.
listedKeywords() - Method in class pulse.problem.statements.model.ThermoOpticalProperties
listedKeywords() - Method in class pulse.problem.statements.model.TwoTemperatureProperties
listedKeywords() - Method in class pulse.problem.statements.NonlinearProblem
listedKeywords() - Method in class pulse.problem.statements.ParticipatingMedium
listedKeywords() - Method in class pulse.problem.statements.PenetrationProblem
listedKeywords() - Method in class pulse.problem.statements.Problem: Listed parameters include: MAXTEMP, DIFFUSIVITY, THICKNESS, HEAT_LOSS_FRONT, HEAT_LOSS_REAR.
listedKeywords() - Method in class pulse.problem.statements.Pulse: The listed parameters for Pulse are: PulseShape, PULSE_WIDTH, SPOT_DIAMETER.
listedKeywords() - Method in class pulse.problem.statements.Pulse2D
listedKeywords() - Method in class pulse.search.direction.GradientBasedOptimiser: The types of the listed parameters for this class include: GRADIENT_RESOLUTION, ERROR_TOLERANCE, ITERATION_LIMIT.
listedKeywords() - Method in class pulse.search.direction.LMOptimiser
listedKeywords() - Method in class pulse.search.direction.PathOptimiser: The types of the listed parameters for this class include: ERROR_TOLERANCE, ITERATION_LIMIT.
listedKeywords() - Method in class pulse.search.linear.LinearOptimiser: The LINEAR_RESOLUTION is the single listed parameter for this class.
listedKeywords() - Method in class pulse.util.PropertyHolder: By default, this will search the children of this PropertyHolder to collect the types of their listed numeric parameters recursively.
listedTypes() - Method in class pulse.input.Metadata: The listed types include TEST_TEMPERATURE, THICKNESS, DIAMETER, PULSE_WIDTH, SPOT_DIAMETER, LASER_ENERGY, DETECTOR_GAIN, DETECTOR_IRIS, sample name and the types listed by the pulse descriptor.
listedTypes() - Method in class pulse.problem.schemes.RadiativeTransferCoupling
listedTypes() - Method in class pulse.problem.schemes.rte.dom.DiscreteOrdinatesMethod
listedTypes() - Method in class pulse.problem.schemes.rte.dom.Discretisation
listedTypes() - Method in class pulse.problem.schemes.rte.dom.ExplicitRungeKutta
listedTypes() - Method in class pulse.problem.schemes.rte.exact.NonscatteringRadiativeTransfer
listedTypes() - Method in class pulse.problem.schemes.solvers.ExplicitNonlinearSolver
listedTypes() - Method in class pulse.problem.statements.PenetrationProblem
listedTypes() - Method in class pulse.problem.statements.Problem
listedTypes() - Method in class pulse.problem.statements.Pulse
listedTypes() - Method in class pulse.problem.statements.TwoTemperatureModel
listedTypes() - Method in class pulse.search.direction.CompositePathOptimiser
listedTypes() - Method in class pulse.tasks.processing.Buffer: The BUFFER_SIZE is the single listed parameter for this class.
listedTypes() - Method in class pulse.util.PropertyHolder: By default, collects a list of default properties corresponding to types defined by listedKeywords().
LMOptimiser - Class in pulse.search.direction: Given an objective function equal to the sum of squared residuals, iteratively approaches the minimum of this function by applying the Levenberg-Marquardt formulas.
load(AbstractReader<T>, String, String) - Static method in class pulse.io.readers.ReaderManager: This method is specifically introduced to handle multiple files in a resources folder enclosed within the jar archive.
loadDataDialog() - Static method in class pulse.ui.components.DataLoader: Initiates a user dialog to load experimental time-temperature profiles.
loadDensity(File) - Static method in class pulse.ui.components.DataLoader: Uses the ReaderManager to create an InterpolationDataset from data stored in f and updates the associated properties of each task.
LoaderButton - Class in pulse.ui.components.buttons
LoaderButton(LoaderButton.DataType) - Constructor for class pulse.ui.components.buttons.LoaderButton
LoaderButton(LoaderButton.DataType, String) - Constructor for class pulse.ui.components.buttons.LoaderButton
LoaderButton.DataType - Enum in pulse.ui.components.buttons
loadIcon(String, int) - Static method in class pulse.util.ImageUtils
loadIcon(String, int, Color) - Static method in class pulse.util.ImageUtils
loadMetadataDialog() - Static method in class pulse.ui.components.DataLoader: Asks the user to select a single file containing the metadata, with the extension given by the MetaFilePopulator class.
loadPulseDialog() - Static method in class pulse.ui.components.DataLoader
loadSpecificHeat(File) - Static method in class pulse.ui.components.DataLoader: Uses the ReaderManager to create an InterpolationDataset from data stored in f and updates the associated properties of each task.
loadState(List<Flag>) - Static method in class pulse.search.direction.ActiveFlags: Loads the argument into the current list of flags.
Log - Class in pulse.tasks.logs: A Log is used to track changes for a specific SearchTask, such as changes of status and/or data collection events.
Log(SearchTask) - Constructor for class pulse.tasks.logs.Log: Creates a Log for this task that will automatically store TaskStatEvents and a list of DataLogEntries in thread-safe collections.
LOG - Static variable in class pulse.math.transforms.StandardTransformations: Logarithmic parameter transform.
LogChart - Class in pulse.ui.components
LogChart() - Constructor for class pulse.ui.components.LogChart
LogEntry - Class in pulse.tasks.logs: An abstract class for LogEntries created for a specific SearchTask.
LogEntry(SearchTask) - Constructor for class pulse.tasks.logs.LogEntry: Creates a LogEntry from this SearchTask.
LogEntryListener - Interface in pulse.tasks.listeners
LogExporter - Class in pulse.io.export: A singleton LogExporter works on Log objects to write html files containing the full contents of the Log.
LogFrame - Class in pulse.ui.frames
LogFrame() - Constructor for class pulse.ui.frames.LogFrame
LogListener - Interface in pulse.ui.components.listeners
LogToolbar - Class in pulse.ui.components.panels
LogToolbar() - Constructor for class pulse.ui.components.panels.LogToolbar
LOW - pulse.problem.statements.ProblemComplexity
LOWER_BOUND - pulse.properties.NumericPropertyKeyword: Lower calculation bound for optimiser.
LOWER_LIMIT - Static variable in class pulse.properties.NumericPropertyFormatter: Start using scientific notations for number whose absolute values are lower than 0.01.

M

main(String[]) - Static method in class pulse.ui.Launcher: Launches the application and creates a GUI.
MainGraphFrame - Class in pulse.ui.frames
MARGIN - Static variable in class pulse.ui.components.LogChart
MathUtils - Class in pulse.math: A utility class containing some common methods potentially enhancing the performance of standard mathematical operations.
Matrices - Class in pulse.math.linear: A static factory class used to create matrices.
MAX_FAILED_ATTEMPTS - Static variable in class pulse.search.direction.CompositePathOptimiser: Maximum number of consequent failed iterations that can be rejected.
MAX_FAILED_ATTEMPTS - Static variable in class pulse.search.direction.LMOptimiser: Up to 5 failed attempts are allowed.
MAX_HIGH_FREQ_WAVES - pulse.properties.NumericPropertyKeyword: Max.
MAX_ITERATIONS_REACHED - pulse.tasks.logs.Details
MAX_LOW_FREQ_WAVES - pulse.properties.NumericPropertyKeyword: Max.
maxAbsComponent() - Method in class pulse.math.linear.Vector: Determines the maximum absolute value of the vector components.
maxAdjustedSignal() - Method in class pulse.HeatingCurve: Retrieves the simple maximum (in arbitrary units) of the baseline-corrected temperature list.
maximumHeating(Pulse2D) - Method in class pulse.problem.statements.model.ThermalProperties
maxNp() - Method in class pulse.problem.statements.model.ThermoOpticalProperties
maxRadiationBiot() - Method in class pulse.problem.statements.model.ThermalProperties: Calculates the maximum Biot number at these conditions, which corresponds to an emissivity of unity.
MAXTEMP - pulse.properties.NumericPropertyKeyword: The maximum temperature, or the signal height -- if a relative temperature scale is used.
mean() - Method in class pulse.math.Segment: Calculates the middle point of this Segment.
mean(List<Double>) - Method in class pulse.baseline.AdjustableBaseline
meanFluxDerivative(int) - Method in interface pulse.problem.schemes.rte.DerivativeCalculator: Calculates the average value of the flux derivatives at the uIndex grid point on the current and previous timesteps.
meanFluxDerivative(int) - Method in class pulse.problem.schemes.rte.FluxesAndExplicitDerivatives
meanFluxDerivative(int) - Method in class pulse.problem.schemes.rte.FluxesAndImplicitDerivatives
meanFluxDerivativeFront() - Method in interface pulse.problem.schemes.rte.DerivativeCalculator: Calculates the average value of the flux derivatives at the first grid point on the current and previous timesteps.
meanFluxDerivativeFront() - Method in class pulse.problem.schemes.rte.FluxesAndExplicitDerivatives
meanFluxDerivativeFront() - Method in class pulse.problem.schemes.rte.FluxesAndImplicitDerivatives
meanFluxDerivativeRear() - Method in interface pulse.problem.schemes.rte.DerivativeCalculator: Calculates the average value of the flux derivatives at the last grid point on the current and previous timesteps.
meanFluxDerivativeRear() - Method in class pulse.problem.schemes.rte.FluxesAndExplicitDerivatives
meanFluxDerivativeRear() - Method in class pulse.problem.schemes.rte.FluxesAndImplicitDerivatives
memoryUsage() - Method in class pulse.util.ResourceMonitor: This will calculate the ratio totalMemory/maxMemory using the standard Runtime.
merge(double) - Method in class pulse.ui.components.models.ResultTableModel: Transforms the result model by merging individual results which: (a) correspond to test temperatures within a specified temperatureDelta (b) form a single sequence of measurements
Messages - Class in pulse.ui
Metadata - Class in pulse.input: Metadata is the information relating to a specific experiment, which can be used by a SearchTask to process an instance of ExperimentalData.
Metadata(NumericProperty, int) - Constructor for class pulse.input.Metadata: Creates a Metadata with the specified parameters and a default rectangular pulse shape.
MetadataExporter - Class in pulse.io.export: A singleton class used to export Metadata objects in a html format.
MetaFilePopulator - Class in pulse.io.readers: An AbstractPopulator capable of handling metafiles.
MidpointIntegrator - Class in pulse.math: Implements the midpoint integration scheme for the evaluation of definite integrals.
MidpointIntegrator(Segment) - Constructor for class pulse.math.MidpointIntegrator
MidpointIntegrator(Segment, NumericProperty) - Constructor for class pulse.math.MidpointIntegrator
MIN_BASELINE_POINTS - Static variable in class pulse.baseline.Baseline
MIN_BINS - Static variable in class pulse.math.filters.RunningAverage
MISSING_BUFFER - pulse.tasks.logs.Details: The buffer has not been created.
MISSING_DIFFERENCE_SCHEME - pulse.tasks.logs.Details: The DifferenceScheme for solving the Problem has not been specified by the user.
MISSING_HEATING_CURVE - pulse.tasks.logs.Details: A heating curve has not been set up for the DifferenceScheme.
MISSING_OPTIMISER - pulse.tasks.logs.Details: There is no information about the selected optimiser.
MISSING_PROBLEM_STATEMENT - pulse.tasks.logs.Details: The Problem has not been specified by the user.
MixedCoupledSolver - Class in pulse.problem.schemes.solvers
MixedCoupledSolver() - Constructor for class pulse.problem.schemes.solvers.MixedCoupledSolver
MixedCoupledSolver(NumericProperty, NumericProperty, NumericProperty) - Constructor for class pulse.problem.schemes.solvers.MixedCoupledSolver
MixedCoupledSolverNL - Class in pulse.problem.schemes.solvers
MixedCoupledSolverNL() - Constructor for class pulse.problem.schemes.solvers.MixedCoupledSolverNL
MixedCoupledSolverNL(NumericProperty, NumericProperty, NumericProperty) - Constructor for class pulse.problem.schemes.solvers.MixedCoupledSolverNL
MixedLinearisedSolver - Class in pulse.problem.schemes.solvers: Performs a fully-dimensionless calculation for the LinearisedProblem.
MixedLinearisedSolver() - Constructor for class pulse.problem.schemes.solvers.MixedLinearisedSolver
MixedLinearisedSolver(NumericProperty, NumericProperty) - Constructor for class pulse.problem.schemes.solvers.MixedLinearisedSolver
MixedLinearisedSolver(NumericProperty, NumericProperty, NumericProperty) - Constructor for class pulse.problem.schemes.solvers.MixedLinearisedSolver
MixedScheme - Class in pulse.problem.schemes: An abstraction describing a weighted semi-implicit finite-difference scheme for solving the one-dimensional heat conduction problem.
MixedScheme() - Constructor for class pulse.problem.schemes.MixedScheme: Constructs a default semi-implicit scheme using the default values of GRID_DENSITY and TAU_FACTOR.
MixedScheme(NumericProperty, NumericProperty) - Constructor for class pulse.problem.schemes.MixedScheme: Constructs a semi-implicit scheme on a one-dimensional grid that is specified by the values N and timeFactor.
MixedScheme(NumericProperty, NumericProperty, NumericProperty) - Constructor for class pulse.problem.schemes.MixedScheme: Constructs a semi-implicit scheme on a one-dimensional grid that is specified by the values N and timeFactor.
MODEL_COMPARISON - pulse.ui.frames.TaskControlFrame.Mode
MODEL_CRITERION - pulse.properties.NumericPropertyKeyword: Model selection criterion (AIC, BIC, etc.).
MODEL_STATISTIC_COLUMN - Static variable in class pulse.ui.components.models.StoredCalculationTableModel
MODEL_WEIGHT - pulse.properties.NumericPropertyKeyword: A weight indicating how good a calculation model is.
ModelSelectionCriterion - Class in pulse.search.statistics: An abstract superclass for the BIC and AIC statistics.
ModelSelectionCriterion(ModelSelectionCriterion) - Constructor for class pulse.search.statistics.ModelSelectionCriterion
ModelSelectionCriterion(OptimiserStatistic) - Constructor for class pulse.search.statistics.ModelSelectionCriterion
ModelSelectionFrame - Class in pulse.ui.frames
ModelSelectionFrame() - Constructor for class pulse.ui.frames.ModelSelectionFrame
ModelToolbar - Class in pulse.ui.components.panels
ModelToolbar() - Constructor for class pulse.ui.components.panels.ModelToolbar
MODERATE - pulse.problem.statements.ProblemComplexity
MouseOnMarkerListener - Class in pulse.ui.components.listeners
MouseOnMarkerListener(Chart, MovableValueMarker, MovableValueMarker, double) - Constructor for class pulse.ui.components.listeners.MouseOnMarkerListener
MovableValueMarker - Class in pulse.ui.components
MovableValueMarker(double) - Constructor for class pulse.ui.components.MovableValueMarker
MovableValueMarker.State - Enum in pulse.ui.components
moveParticles() - Method in class pulse.search.direction.pso.ParticleSwarmOptimiser
Mover - Interface in pulse.search.direction.pso
MOVING - pulse.ui.components.MovableValueMarker.State
multComponents(Vector) - Method in class pulse.math.linear.Vector: Component-wise vector multiplication
multiply(double) - Method in class pulse.math.linear.RectangularMatrix: Scales this Matrix by f, which results in element-wise multiplication by f.
multiply(double) - Method in class pulse.math.linear.Vector: Performs an element-wise multiplication by f.
multiply(RectangularMatrix) - Method in class pulse.math.linear.RectangularMatrix: Performs Matrix multiplication.
multiply(Vector) - Method in class pulse.math.linear.RectangularMatrix: Multiplies this Matrix by the vector v, which is represented by a n × 1 Matrix, where n is the dimension of v.

N

NEGATIVE - Static variable in class pulse.input.Range
NeighbourhoodTopology - Interface in pulse.search.direction.pso
neighbours(Particle, SwarmState) - Method in interface pulse.search.direction.pso.NeighbourhoodTopology
NetzschCSVReader - Class in pulse.io.readers: Reads the .CSV files exported from Proteus LFA Analysis software.
NetzschPulseCSVReader - Class in pulse.io.readers: Reads numeric pulse data generated by the Proteus LFA Analysis export tool.
NEW_STATE - pulse.tasks.listeners.TaskRepositoryEvent.State: A new state has been loaded.
newInstance(Class<K>, Object...) - Method in class pulse.util.InstanceDescriptor
NewtonCotesQuadrature - Class in pulse.problem.schemes.rte.exact: A class for evaluating the composition product using a simple Newton-Cotes quadrature with a cutoff.
NewtonCotesQuadrature() - Constructor for class pulse.problem.schemes.rte.exact.NewtonCotesQuadrature: Constructs a default NewtonCotesQuadrature with integration bounds spanning from 0 to 1.
NewtonCotesQuadrature(Segment) - Constructor for class pulse.problem.schemes.rte.exact.NewtonCotesQuadrature: Constructs a default NewtonCotesQuadrature whose integration bounds are specified by the argument.
NewtonCotesQuadrature(Segment, NumericProperty) - Constructor for class pulse.problem.schemes.rte.exact.NewtonCotesQuadrature: Constructs a custom NewtonCotesQuadrature with specified integration bounds and number of integration segments.
Nitrogen - Class in pulse.problem.statements.model
Nitrogen() - Constructor for class pulse.problem.statements.model.Nitrogen
NONE - pulse.tasks.logs.Details
NONE - Static variable in interface pulse.math.Window
NONLINEAR_PRECISION - pulse.properties.NumericPropertyKeyword: The precision parameter used to solve nonlinear problems.
NonlinearProblem - Class in pulse.problem.statements
NonlinearProblem() - Constructor for class pulse.problem.statements.NonlinearProblem
NonlinearProblem(NonlinearProblem) - Constructor for class pulse.problem.statements.NonlinearProblem
NonscatteringAnalyticalDerivatives - Class in pulse.problem.schemes.rte.exact: A solver of the radiative transfer equation for an absorbing-emitting medium where the fluxes and their derivatives are calculated using analytical formulae with the selected numerical quadrature.
NonscatteringAnalyticalDerivatives(ParticipatingMedium, Grid) - Constructor for class pulse.problem.schemes.rte.exact.NonscatteringAnalyticalDerivatives
NonscatteringDiscreteDerivatives - Class in pulse.problem.schemes.rte.exact: A solver of the radiative transfer equation for an absorbing-emitting medium where the fluxes are calculated using analytical formulae while their derivatives are calculated using the central-difference approximation.
NonscatteringDiscreteDerivatives(ParticipatingMedium, Grid) - Constructor for class pulse.problem.schemes.rte.exact.NonscatteringDiscreteDerivatives
NonscatteringRadiativeTransfer - Class in pulse.problem.schemes.rte.exact
NonscatteringRadiativeTransfer(ParticipatingMedium, Grid) - Constructor for class pulse.problem.schemes.rte.exact.NonscatteringRadiativeTransfer
NORMAL - pulse.problem.schemes.rte.RTECalculationStatus: The current calculation step finished normally.
normalise() - Method in class pulse.math.linear.Vector: Performs normalisation, e.g.
NormalityTest - Class in pulse.search.statistics: A normality test is invoked after a task finishes, to validate its result.
NormalityTest() - Constructor for class pulse.search.statistics.NormalityTest
normalOperation() - Method in class pulse.problem.schemes.CoupledImplicitScheme
normalOperation() - Method in class pulse.problem.schemes.DifferenceScheme
normalOperation() - Method in class pulse.problem.schemes.solvers.ExplicitCoupledSolver
notifyClear() - Method in class pulse.ui.components.panels.TaskToolbar
notifyExit() - Method in class pulse.ui.components.PulseMainMenu
notifyGraph() - Method in class pulse.ui.components.panels.TaskToolbar
notifyListeners(TaskRepositoryEvent) - Method in class pulse.tasks.TaskManager: Notifies the TaskRepositoryListeners of the e
notifyPreview() - Method in class pulse.ui.frames.ResultFrame
notifyProblem() - Method in class pulse.ui.components.PulseMainMenu
notifyRemove() - Method in class pulse.ui.components.panels.TaskToolbar
notifyReset() - Method in class pulse.ui.components.panels.TaskToolbar
notifySearch() - Method in class pulse.ui.components.PulseMainMenu
NUM_PARTITIONS - Static variable in class pulse.math.FunctionWithInterpolation
NumberEditor - Class in pulse.ui.components.controllers
NumberEditor(NumericProperty) - Constructor for class pulse.ui.components.controllers.NumberEditor
numberFormat(NumericProperty) - Method in class pulse.properties.NumericPropertyFormatter
numberOfStages() - Method in class pulse.problem.schemes.rte.dom.ButcherTableau
numberOfTasks() - Method in class pulse.tasks.TaskManager: Gets the current number of tasks in the repository.
numericData() - Method in class pulse.util.PropertyHolder: Lists all numeric data contained in this PropertyHolder.
numericProperties() - Method in class pulse.util.Accessible: Tries to access the property getter methods in this Accessible, which should be declared as no-argument methods with a specific return type.
NumericProperties - Class in pulse.properties: Default operations with NumericProperties
numericProperty(NumericPropertyKeyword) - Method in class pulse.input.Metadata: Searches the internal list of this class for a property with the key type.
numericProperty(NumericPropertyKeyword) - Method in class pulse.util.Accessible: Recursively searches for a NumericProperty from the unique set of numeric properties in this Accessible by comparing its NumericPropertyKeyword to type.
NumericProperty - Class in pulse.properties: A Property that has a numeric value, an error associated with this value, a definition domain defining sensible value, and a dimensionFactor used to convert the value to SI.
NumericProperty(Number, NumericProperty) - Constructor for class pulse.properties.NumericProperty: Creates a NumericProperty based on {
NumericProperty(NumericProperty) - Constructor for class pulse.properties.NumericProperty: A copy constructor for NumericProperty
NumericProperty(NumericPropertyKeyword, Number...) - Constructor for class pulse.properties.NumericProperty: Constructor used by XMLConverter to create a NumericProperty with fully specified set of parameters
NumericPropertyComparator - Class in pulse.ui.components.controllers
NumericPropertyComparator() - Constructor for class pulse.ui.components.controllers.NumericPropertyComparator
NumericPropertyFormatter - Class in pulse.properties
NumericPropertyFormatter(NumericProperty, boolean, boolean) - Constructor for class pulse.properties.NumericPropertyFormatter
NumericPropertyKeyword - Enum in pulse.properties: Contains a list of NumericProperty types recognised by the constituent modules of PULsE.
NumericPropertyRenderer - Class in pulse.ui.components.controllers
NumericPropertyRenderer() - Constructor for class pulse.ui.components.controllers.NumericPropertyRenderer
NumericPulse - Class in pulse.problem.laser: A numeric pulse is given by a set of discrete NumericPulseData measured independently using a pulse diode.
NumericPulse() - Constructor for class pulse.problem.laser.NumericPulse
NumericPulse(NumericPulse) - Constructor for class pulse.problem.laser.NumericPulse: Copy constructor
NumericPulseData - Class in pulse.problem.laser: An instance of the AbstractData class, which also declares an externalID.
NumericPulseData(int) - Constructor for class pulse.problem.laser.NumericPulseData: Stores id and calls super-constructor
NumericPulseData(NumericPulseData) - Constructor for class pulse.problem.laser.NumericPulseData: Copies everything, including the id number.
NUMPOINTS - pulse.properties.NumericPropertyKeyword: The number of points in the HeatingCurve.

O

OBJECTIVE_FUNCTION - pulse.properties.NumericPropertyKeyword: Value of objective function.
objectiveFunction() - Method in class pulse.search.GeneralTask
objectiveFunction(GeneralTask) - Method in interface pulse.Response: Calculates the value of the objective function used to identify the current state of the optimiser.
objectiveFunction(GeneralTask) - Method in class pulse.search.SimpleResponse
objectiveFunction(GeneralTask) - Method in class pulse.tasks.Calculation: This will use the current DifferenceScheme to solve the Problem for this SearchTask and calculate the SSR value showing how well (or bad) the calculated solution describes the ExperimentalData.
ODEIntegrator - Class in pulse.problem.schemes.rte.dom
ODEIntegrator(Discretisation) - Constructor for class pulse.problem.schemes.rte.dom.ODEIntegrator
onChildPropertyChanged(PropertyEvent) - Method in interface pulse.util.HierarchyListener: This is invoked by the UpwardsNavigable when an event resulting in a change of the child's property has occurred.
onClearRequest() - Method in interface pulse.ui.components.listeners.TaskActionListener
onConfirm() - Method in interface pulse.ui.components.controllers.ConfirmAction
onCurveEvent(CurveEvent) - Method in interface pulse.HeatingCurveListener: Signals that a CurveEvent has occurred.
onDataChanged(DataEvent) - Method in interface pulse.input.listeners.DataListener: Triggered when a certain DataEvent specified by its DataEventType is initiated from within the ExperimentalData object.
onDataCollected(LogEntry) - Method in interface pulse.tasks.listeners.DataCollectionListener
onDeleteRequest() - Method in interface pulse.ui.components.listeners.ResultRequestListener
onDensityDataLoaded() - Method in interface pulse.input.listeners.ExternalDatasetListener
onDescriptorChanged() - Method in interface pulse.util.DescriptorChangeListener
OneDimensionalScheme - Class in pulse.problem.schemes
OneDimensionalScheme() - Constructor for class pulse.problem.schemes.OneDimensionalScheme
OneDimensionalScheme(NumericProperty) - Constructor for class pulse.problem.schemes.OneDimensionalScheme
onExitRequested() - Method in interface pulse.ui.components.listeners.ExitRequestListener
onExportRequest() - Method in interface pulse.ui.components.listeners.ResultRequestListener
onFormatChanged(ResultFormatEvent) - Method in interface pulse.ui.components.listeners.ResultListener
onGraphRequest() - Method in interface pulse.ui.components.listeners.TaskActionListener
onLogExportRequest() - Method in interface pulse.ui.components.listeners.LogListener
onLogFinished(Log) - Method in interface pulse.tasks.listeners.LogEntryListener
onLogModeChanged(boolean) - Method in interface pulse.ui.components.listeners.LogListener
onMergeRequest() - Method in interface pulse.ui.components.listeners.ResultRequestListener
onNewEntry(LogEntry) - Method in interface pulse.tasks.listeners.LogEntryListener
onNewSessionLoaded() - Method in interface pulse.tasks.listeners.SessionListener
onPlotRequest() - Method in interface pulse.ui.components.listeners.PlotRequestListener
onPreviewFrameRequest() - Method in interface pulse.ui.components.listeners.PreviewFrameCreationListener
onPreviewRequest() - Method in interface pulse.ui.components.listeners.ResultRequestListener
onProblemSelected(ProblemSelectionEvent) - Method in interface pulse.ui.components.listeners.ProblemSelectionListener
onProblemStatementShowRequest() - Method in interface pulse.ui.components.listeners.FrameVisibilityRequestListener
onPropertyChanged(PropertyEvent) - Method in interface pulse.util.PropertyHolderListener: This event is triggered by any PropertyHolder, the properties of which have been changed.
onRemoveRequest() - Method in interface pulse.ui.components.listeners.TaskActionListener
onResetRequest() - Method in interface pulse.ui.components.listeners.TaskActionListener
onSearchSettingsShowRequest() - Method in interface pulse.ui.components.listeners.FrameVisibilityRequestListener
onSelectionChanged(TaskSelectionEvent) - Method in interface pulse.tasks.listeners.TaskSelectionListener
onSolverException(SolverException) - Method in class pulse.search.GeneralTask: Specifies what should be done when a solver exception is encountered.
onSolverException(SolverException) - Method in class pulse.tasks.SearchTask
onSpecificHeatDataLoaded() - Method in interface pulse.input.listeners.ExternalDatasetListener
onStatusChange(StateEntry) - Method in interface pulse.tasks.listeners.StatusChangeListener
onStatusUpdate(RTECalculationStatus) - Method in interface pulse.problem.schemes.rte.RTECalculationListener: Invoked when a sub-step of the RTE solution has finished.
onTaskListChanged(TaskRepositoryEvent) - Method in interface pulse.tasks.listeners.TaskRepositoryListener
onUndoRequest() - Method in interface pulse.ui.components.listeners.ResultRequestListener
onValueAssigned() - Method in interface pulse.math.filters.AssignmentListener
OpacitySlider - Class in pulse.ui.components.panels
OpacitySlider() - Constructor for class pulse.ui.components.panels.OpacitySlider
OPTICAL_THICKNESS - pulse.properties.NumericPropertyKeyword: The optical thickness of a material, equal to a product of its geometric thickness and the absorptivity.
opticalCoordinateAt(int) - Method in class pulse.problem.schemes.rte.RadiativeTransferSolver: Retrieves the optical coordinate corresponding to the grid index i
Optimisable - Interface in pulse.search: An interface for dealing with optimisation variables.
OptimisablePolyline - Class in pulse.math.filters
OptimisablePolyline(List<Point2D>) - Constructor for class pulse.math.filters.OptimisablePolyline
OPTIMISATION_ERROR - pulse.problem.schemes.solvers.SolverException.SolverExceptionType
OPTIMISATION_TIMEOUT - pulse.problem.schemes.solvers.SolverException.SolverExceptionType
optimisationVector(ParameterVector) - Method in class pulse.baseline.AdjustableBaseline
optimisationVector(ParameterVector) - Method in class pulse.baseline.LinearBaseline
optimisationVector(ParameterVector) - Method in class pulse.baseline.SinusoidalBaseline
optimisationVector(ParameterVector) - Method in class pulse.input.Range: The optimisation vector contain both the lower and upper bounds with the absolute constraints equal to a fourth of their values.
optimisationVector(ParameterVector) - Method in class pulse.math.filters.OptimisablePolyline
optimisationVector(ParameterVector) - Method in class pulse.math.Harmonic: The optimisation vector can include the amplitude, frequency and phase shift of a sinusoid, and a baseline intercept value of the superclass.
optimisationVector(ParameterVector) - Method in class pulse.problem.statements.ClassicalProblem
optimisationVector(ParameterVector) - Method in class pulse.problem.statements.ClassicalProblem2D
optimisationVector(ParameterVector) - Method in class pulse.problem.statements.DiathermicMedium
optimisationVector(ParameterVector) - Method in class pulse.problem.statements.model.AbsorptionModel
optimisationVector(ParameterVector) - Method in class pulse.problem.statements.model.ThermoOpticalProperties
optimisationVector(ParameterVector) - Method in class pulse.problem.statements.NonlinearProblem: Does the same as super-class method plus extracts the laser energy and stores it in the output, if needed.
optimisationVector(ParameterVector) - Method in class pulse.problem.statements.ParticipatingMedium
optimisationVector(ParameterVector) - Method in class pulse.problem.statements.PenetrationProblem
optimisationVector(ParameterVector) - Method in class pulse.problem.statements.Problem: Calculates the vector argument defined on Rⁿ to the scalar objective function for this Problem.
optimisationVector(ParameterVector) - Method in class pulse.problem.statements.TwoTemperatureModel
optimisationVector(ParameterVector) - Method in interface pulse.search.Optimisable: Calculates the vector argument defined on Rⁿ to the scalar objective function for this Optimisable.
OptimisedRunningAverage - Class in pulse.math.filters
OptimisedRunningAverage() - Constructor for class pulse.math.filters.OptimisedRunningAverage
OptimisedRunningAverage(int) - Constructor for class pulse.math.filters.OptimisedRunningAverage
OPTIMISER_STATISTIC - pulse.properties.NumericPropertyKeyword: Optimiser statistic (usually, RSS).
OPTIMISER_STATISTIC_COLUMN - Static variable in class pulse.ui.components.models.StoredCalculationTableModel
OptimiserStatistic - Class in pulse.search.statistics: An Optimiser statistic is simply the objective function that is calculated by the Optimiser.
OptimiserStatistic() - Constructor for class pulse.search.statistics.OptimiserStatistic
OptimiserStatistic(OptimiserStatistic) - Constructor for class pulse.search.statistics.OptimiserStatistic
OrdinateSet - Class in pulse.problem.schemes.rte.dom: A fixed set of discrete cosine nodes and weights for the angular discretisation of a radiative transfer equation.
OrdinateSet(String, double[], double[]) - Constructor for class pulse.problem.schemes.rte.dom.OrdinateSet
outerProduct(Vector, Vector) - Static method in class pulse.math.linear.SquareMatrix: Calculates the outer product of two vectors.

P

Parameter - Class in pulse.math: Parameter class
Parameter(Parameter) - Constructor for class pulse.math.Parameter
Parameter(ParameterIdentifier) - Constructor for class pulse.math.Parameter
Parameter(ParameterIdentifier, Transformable, Segment) - Constructor for class pulse.math.Parameter
PARAMETER_VALUES_NOT_SENSIBLE - pulse.tasks.logs.Details
ParameterIdentifier - Class in pulse.math
ParameterIdentifier(int) - Constructor for class pulse.math.ParameterIdentifier
ParameterIdentifier(NumericPropertyKeyword) - Constructor for class pulse.math.ParameterIdentifier
ParameterIdentifier(NumericPropertyKeyword, int) - Constructor for class pulse.math.ParameterIdentifier
parameterListChanged() - Method in class pulse.util.PropertyHolder
ParameterTableModel - Class in pulse.ui.components.models
ParameterTableModel(boolean) - Constructor for class pulse.ui.components.models.ParameterTableModel
ParameterVector - Class in pulse.math: A wrapper subclass that assigns ParameterIdentifiers to specific components of the vector.
ParameterVector(List<ParameterIdentifier>) - Constructor for class pulse.math.ParameterVector: Constructs an IndexedVector with the specified list of keywords.
ParameterVector(ParameterVector) - Constructor for class pulse.math.ParameterVector: Copy constructor
ParameterVector(ParameterVector, Vector) - Constructor for class pulse.math.ParameterVector: Constructs an IndexedVector based on v and a list of keyword indices
PARKERS_COEFFICIENT - Variable in class pulse.problem.statements.model.ThermalProperties: The corrected proportionality factor setting out the relation between the thermal diffusivity and the half-rise time of an ExperimentalData curve.
parse(String) - Static method in class pulse.tasks.Identifier: Seeks an Identifier from the list of available tasks in TaskManager that matches this string.
parse(String, ParsePosition) - Method in class pulse.properties.ScientificFormat
partial(int, double, double[], int, int) - Method in class pulse.problem.schemes.rte.dom.ODEIntegrator
partial(int, int, double, int, int) - Method in class pulse.problem.schemes.rte.dom.ODEIntegrator
partialSum(int, int, int, int) - Method in class pulse.problem.schemes.rte.dom.LinearAnisotropicPF
partialSum(int, int, int, int) - Method in class pulse.problem.schemes.rte.dom.PhaseFunction
ParticipatingMedium - Class in pulse.problem.statements
ParticipatingMedium() - Constructor for class pulse.problem.statements.ParticipatingMedium
ParticipatingMedium(ParticipatingMedium) - Constructor for class pulse.problem.statements.ParticipatingMedium
Particle - Class in pulse.search.direction.pso: Class defining a particle - the basic unit of a swarm.
Particle(ParticleState, int) - Constructor for class pulse.search.direction.pso.Particle
ParticleState - Class in pulse.search.direction.pso
ParticleState(ParameterVector) - Constructor for class pulse.search.direction.pso.ParticleState
ParticleState(ParameterVector, ParameterVector) - Constructor for class pulse.search.direction.pso.ParticleState
ParticleState(ParticleState) - Constructor for class pulse.search.direction.pso.ParticleState
ParticleSwarmOptimiser - Class in pulse.search.direction.pso
ParticleSwarmOptimiser() - Constructor for class pulse.search.direction.pso.ParticleSwarmOptimiser
PathOptimiser - Class in pulse.search.direction: An abstract class that defines the mathematical basis of solving the reverse heat conduction problem.
PathOptimiser() - Constructor for class pulse.search.direction.PathOptimiser: Abstract constructor that sets up the default ITERATION_LIMIT, ERROR_TOLERANCE and GRADIENT_RESOLUTION for this PathSolver.
PearsonCorrelation - Class in pulse.search.statistics: Wrapper CorrelationTest class for ApacheCommonsMath Pearson Correlation.
PearsonCorrelation() - Constructor for class pulse.search.statistics.PearsonCorrelation
penalisingTerm(int, int) - Method in class pulse.search.statistics.AICStatistic
penalisingTerm(int, int) - Method in class pulse.search.statistics.BICStatistic
penalisingTerm(int, int) - Method in class pulse.search.statistics.ModelSelectionCriterion: The penalising term, which is different depending on implementation.
PenetrationProblem - Class in pulse.problem.statements
PenetrationProblem() - Constructor for class pulse.problem.statements.PenetrationProblem
PenetrationProblem(PenetrationProblem) - Constructor for class pulse.problem.statements.PenetrationProblem
PeriodicTransform - Class in pulse.math.transforms
PeriodicTransform(Segment) - Constructor for class pulse.math.transforms.PeriodicTransform: Only the upper bound of the argument is used.
PhaseFunction - Class in pulse.problem.schemes.rte.dom
PhaseFunction(ThermoOpticalProperties, Discretisation) - Constructor for class pulse.problem.schemes.rte.dom.PhaseFunction
phi(int) - Method in class pulse.problem.schemes.ExplicitScheme
phi(int) - Method in class pulse.problem.schemes.solvers.ExplicitCoupledSolver
phi(int) - Method in class pulse.problem.schemes.solvers.ExplicitTranslucentSolver
phi(int) - Method in class pulse.problem.schemes.TridiagonalMatrixAlgorithm
PHI - Static variable in class pulse.search.linear.GoldenSectionOptimiser: The golden section φ, which is approximately equal to 0.618033989.
PLANCK_NUMBER - pulse.properties.NumericPropertyKeyword: The Planck number.
plot() - Method in class pulse.ui.frames.MainGraphFrame
plot(boolean) - Method in class pulse.ui.components.TaskPopupMenu
plot(ActionEvent) - Static method in class pulse.ui.components.panels.ProblemToolbar
plot(ResidualStatistic) - Method in class pulse.ui.components.ResidualsChart
plot(Calculation) - Method in class pulse.ui.components.PulseChart
plot(DataLogEntry, double) - Method in class pulse.ui.components.LogChart
plot(Log) - Method in class pulse.ui.components.LogChart
plot(SearchTask, boolean) - Method in class pulse.ui.components.Chart
plot(T) - Method in class pulse.ui.components.AuxPlotter
plot(T) - Method in class pulse.ui.frames.ExternalGraphFrame
plot(T) - Method in class pulse.ui.frames.InternalGraphFrame
PlotRequestListener - Interface in pulse.ui.components.listeners
plotSingle(HeatingCurve) - Method in class pulse.ui.components.Chart
points() - Method in class pulse.math.filters.OptimisablePolyline
poly(double) - Method in class pulse.math.LegendrePoly: Calculates the value of this Legendre polynomial at x
PolylineOptimiser - Class in pulse.math.filters
PolylineOptimiser(DiscreteInput, OptimisablePolyline) - Constructor for class pulse.math.filters.PolylineOptimiser
PolylineOptimiser.PolylineResponse - Class in pulse.math.filters
PolylineResponse(OptimiserStatistic) - Constructor for class pulse.math.filters.PolylineOptimiser.PolylineResponse
populate(File, Metadata) - Method in class pulse.io.readers.MetaFilePopulator
populate(File, T) - Method in interface pulse.io.readers.AbstractPopulator: Tries to populate t from data contained in f.
populate(AbstractData, BufferedReader) - Static method in class pulse.io.readers.NetzschCSVReader
populateWithAllProperties() - Method in class pulse.ui.components.models.ParameterTableModel
POSITIVE - Static variable in class pulse.input.Range
post(String) - Method in class pulse.tasks.logs.AbstractLogger
post(String) - Method in class pulse.ui.components.GraphicalLogPane
post(String) - Method in class pulse.ui.components.TextLogPane
post(LogEntry) - Method in class pulse.tasks.logs.AbstractLogger
post(LogEntry) - Method in class pulse.ui.components.GraphicalLogPane
post(LogEntry) - Method in class pulse.ui.components.TextLogPane
postAll() - Method in class pulse.tasks.logs.AbstractLogger
postAll() - Method in class pulse.ui.components.GraphicalLogPane
postProcessing() - Method in class pulse.search.GeneralTask: Override this to add post-processing checks e.g.
postProcessing() - Method in class pulse.tasks.SearchTask
powerAt(double) - Method in class pulse.problem.schemes.rte.BlackbodySpectrum: Calculates the emissive power at the given coordinate.
prepare(Problem) - Method in class pulse.problem.schemes.DifferenceScheme: Contains preparatory steps to ensure smooth running of the solver.This includes creating a DiscretePulseobject and adjusting the grid of this scheme to match the DiscretePulsecreated for this problem Finally, a heating curve is cleared from the previously calculated values.
prepare(Problem) - Method in class pulse.problem.schemes.ImplicitScheme
prepare(Problem) - Method in class pulse.problem.schemes.solvers.ADILinearisedSolver
prepare(Problem) - Method in class pulse.problem.schemes.solvers.ExplicitCoupledSolver
prepare(Problem) - Method in class pulse.problem.schemes.solvers.ExplicitLinearisedSolver
prepare(Problem) - Method in class pulse.problem.schemes.solvers.ExplicitNonlinearSolver
prepare(Problem) - Method in class pulse.problem.schemes.solvers.ExplicitTranslucentSolver
prepare(Problem) - Method in class pulse.problem.schemes.solvers.ImplicitCoupledSolver
prepare(Problem) - Method in class pulse.problem.schemes.solvers.ImplicitDiathermicSolver
prepare(Problem) - Method in class pulse.problem.schemes.solvers.ImplicitLinearisedSolver
prepare(Problem) - Method in class pulse.problem.schemes.solvers.ImplicitNonlinearSolver
prepare(Problem) - Method in class pulse.problem.schemes.solvers.ImplicitTranslucentSolver
prepare(Problem) - Method in class pulse.problem.schemes.solvers.ImplicitTwoTemperatureSolver
prepare(Problem) - Method in class pulse.problem.schemes.solvers.MixedCoupledSolver
prepare(Problem) - Method in class pulse.problem.schemes.solvers.MixedLinearisedSolver
prepare(GeneralTask) - Method in class pulse.search.direction.BFGSOptimiser: Calculated the gradient at the end of this step.
prepare(GeneralTask) - Method in class pulse.search.direction.LMOptimiser: Calculates the Jacobian, if needed, evaluates the gradient and the Hessian matrix.
prepare(GeneralTask) - Method in class pulse.search.direction.PathOptimiser: Defines a set of procedures to be run at the end of the search iteration.
prepare(GeneralTask) - Method in class pulse.search.direction.pso.ParticleSwarmOptimiser
prepare(GeneralTask) - Method in class pulse.search.direction.pso.SwarmState
prepare(GeneralTask) - Method in class pulse.search.direction.SR1Optimiser: Calculated the gradient at the end of this step.
prepare(GeneralTask) - Method in class pulse.search.direction.SteepestDescentOptimiser: Calculates the gradient value at the end of each step.
prepareStep(int) - Method in class pulse.problem.schemes.ADIScheme: Contains only an empty statement, as the pulse needs to be calculated not only for the time step m but also accounting for the radial coordinate
prepareStep(int) - Method in class pulse.problem.schemes.DifferenceScheme: Do preparatory calculations that depend only on the time variable, e.g., calculate the pulse power.
preprocess() - Method in class pulse.input.ExperimentalData
PREVIEW - pulse.ui.frames.TaskControlFrame.Mode
PreviewFrame - Class in pulse.ui.frames
PreviewFrame() - Constructor for class pulse.ui.frames.PreviewFrame
PreviewFrameCreationListener - Interface in pulse.ui.components.listeners
printOrdinateSet() - Method in class pulse.problem.schemes.rte.dom.OrdinateSet
printRangeAndNumber(NumericProperty, Number) - Static method in class pulse.properties.NumericProperties
printTableau() - Method in class pulse.problem.schemes.rte.dom.ButcherTableau
printTimeTaken(Log) - Method in class pulse.tasks.logs.AbstractLogger
printTimeTaken(Log) - Method in class pulse.ui.components.GraphicalLogPane
printTimeTaken(Log) - Method in class pulse.ui.components.TextLogPane
printToStream(AbstractData, FileOutputStream, Extension) - Method in class pulse.io.export.CurveExporter
printToStream(ExperimentalData, FileOutputStream, Extension) - Method in class pulse.io.export.RawDataExporter: Invokes the printToStream(...) method of the HeatingCurveExporter instance.
printToStream(Metadata, FileOutputStream, Extension) - Method in class pulse.io.export.MetadataExporter: Prints the metadata content in html format in two columns, where the first column forms the description of the entry and the second column gives its value.
printToStream(ResidualStatistic, FileOutputStream, Extension) - Method in class pulse.io.export.ResidualStatisticExporter: Prints the residuals in a two-column format in a html or csv file (accepts both extensions).
printToStream(Log, FileOutputStream, Extension) - Method in class pulse.io.export.LogExporter: Prints all the data contained in this Log using fos.
printToStream(Result, FileOutputStream, Extension) - Method in class pulse.io.export.ResultExporter: Prints the data of this Result with fos either in a html or a csv file format.
printToStream(ResultTable, FileOutputStream, Extension) - Method in class pulse.io.export.ResultTableExporter: This will create a single file with the output.
printToStream(TextLogPane, FileOutputStream, Extension) - Method in class pulse.io.export.TextLogPaneExporter: This will write all contents of pane, which are accessed using an HTMLEditorKit directly to fos.
printToStream(T, FileOutputStream, Extension) - Method in interface pulse.io.export.Exporter: The interface method is implemented by the subclasses to define the exportable content in detail.
probability(List<ModelSelectionCriterion>) - Method in class pulse.search.statistics.ModelSelectionCriterion: Calculates the probability that this model is the best among all others.
Problem - Class in pulse.problem.statements: A Problem is an abstract class defining the general rules for handling heat conduction problems, and also providing access to the basic properties used in the calculation with one of the DifferenceSchemes.
Problem() - Constructor for class pulse.problem.statements.Problem: Creates a Problem with default parameters (as found in the .XML file).
Problem(Problem) - Constructor for class pulse.problem.statements.Problem: Copies all essential parameters from p, excluding the heating curve, which is created anew.
PROBLEM - pulse.ui.frames.TaskControlFrame.Mode
PROBLEM_COLUMN - Static variable in class pulse.ui.components.models.StoredCalculationTableModel
ProblemCellRenderer - Class in pulse.ui.components.controllers
ProblemCellRenderer() - Constructor for class pulse.ui.components.controllers.ProblemCellRenderer
ProblemComplexity - Enum in pulse.problem.statements
ProblemSelectionEvent - Class in pulse.ui.components.listeners
ProblemSelectionEvent(Problem, Object) - Constructor for class pulse.ui.components.listeners.ProblemSelectionEvent
ProblemSelectionListener - Interface in pulse.ui.components.listeners
ProblemStatementFrame - Class in pulse.ui.frames
ProblemStatementFrame() - Constructor for class pulse.ui.frames.ProblemStatementFrame: Create the frame.
ProblemToolbar - Class in pulse.ui.components.panels
ProblemToolbar() - Constructor for class pulse.ui.components.panels.ProblemToolbar
ProblemTree - Class in pulse.ui.components
ProblemTree(List<Problem>) - Constructor for class pulse.ui.components.ProblemTree
process() - Method in class pulse.tasks.Calculation: This will use the current DifferenceScheme to solve the Problem for this Calculation.
process(double[]) - Method in class pulse.math.ZScore
process(List<Point2D>) - Method in interface pulse.math.filters.Filter
process(List<Point2D>) - Method in class pulse.math.filters.Randomiser
process(List<Point2D>) - Method in class pulse.math.filters.RunningAverage: Constructs a deliberately crude representation of this heating curve by calculating a running average.
process(DiscreteInput) - Method in interface pulse.math.filters.Filter
process(DiscreteInput) - Method in class pulse.math.filters.OptimisedRunningAverage
ProgressDialog - Class in pulse.ui.frames.dialogs
ProgressDialog() - Constructor for class pulse.ui.frames.dialogs.ProgressDialog
ProgressDialog.ProgressWorker - Interface in pulse.ui.frames.dialogs
property(Property) - Method in class pulse.util.Accessible: Searches for a Property in this Accessible that looks similar to the argument.
Property - Interface in pulse.properties: The basic interface for properties.
propertyChange(PropertyChangeEvent) - Method in class pulse.ui.frames.dialogs.ProgressDialog: Invoked when task's progress property changes.
PropertyEvent - Class in pulse.util: An event which is created to signal about the changes with a PropertyHolder.
PropertyEvent(Object, PropertyHolder, Property) - Constructor for class pulse.util.PropertyEvent: Constructs an event that has happened because of source, resulting in an action taken on the property.
PropertyHolder - Class in pulse.util: An Accessible that has a list of parameters it accepts as its own and a list of PropertyHolderListener that track changes with all properties of the Accessible.
PropertyHolder() - Constructor for class pulse.util.PropertyHolder
PropertyHolderListener - Interface in pulse.util: A listener used by PropertyHolders to track changes with the associated Properties.
PropertyHolderTable - Class in pulse.ui.components
PropertyHolderTable(PropertyHolder) - Constructor for class pulse.ui.components.PropertyHolderTable
pulse - package pulse: Contains some of the most frequently used classes, which did not seem to fit in any other packages.
pulse(int) - Method in class pulse.problem.schemes.DifferenceScheme
pulse(int) - Method in class pulse.problem.schemes.solvers.MixedCoupledSolver
pulse(int) - Method in class pulse.problem.schemes.solvers.MixedLinearisedSolver
pulse(int, int) - Method in class pulse.problem.schemes.solvers.ADILinearisedSolver
Pulse - Class in pulse.problem.statements: A Pulse stores the parameters of the laser pulse, but does not provide the calculation facilities.
Pulse() - Constructor for class pulse.problem.statements.Pulse: Creates a Pulse with default values of pulse width and laser spot diameter (as per XML specification) and with a default pulse temporal shape (rectangular).
Pulse(Pulse) - Constructor for class pulse.problem.statements.Pulse: Copy constructor
PULSE_WIDTH - pulse.properties.NumericPropertyKeyword: Pulse width (time).
pulse.baseline - package pulse.baseline: Contains classes for describing and evaluating the baseline signal of a HeatingCurve or its subclasses.
pulse.input - package pulse.input: Introduces internal data structures that (a) are created as a result of parsing specific types of input files, such as: experimental heating curves, metadata, and property curves (e.g.
pulse.input.listeners - package pulse.input.listeners: Package contains listeners and event types which are used to track any runtime changes with the internal data structures defined in pulse and pulse.input.
pulse.io.export - package pulse.io.export: Package contains the PULsE export API, which currently consists of different exporter classes, an export manager, an XML converter and a MassExporter class.
pulse.io.readers - package pulse.io.readers: The main class of this package is ReaderManager.
pulse.math - package pulse.math: Provides general math functionality that is used when finding the direction (a Vector) of the minimum, including operations with vector and matrices.
pulse.math.filters - package pulse.math.filters
pulse.math.linear - package pulse.math.linear: A linear algebra package based mostly on the EJML library.
pulse.math.transforms - package pulse.math.transforms
pulse.problem.laser - package pulse.problem.laser: This package deals with discrete laser pulse representation and their various temporal shapes.
pulse.problem.schemes - package pulse.problem.schemes: This package deals with abstractions associated with finite differences in PULsE, including the definition of Grids, which determine the partitioning rules for space and time variables.
pulse.problem.schemes.rte - package pulse.problem.schemes.rte: Contains generic classes that act as a bridge between the specific implementation of radiative heat transfer and the heat problem solvers.
pulse.problem.schemes.rte.dom - package pulse.problem.schemes.rte.dom: Contains the implementation of the discrete ordinates method (DOM) for the solution of a anisotropic nonlinear radiative transfer equation.
pulse.problem.schemes.rte.exact - package pulse.problem.schemes.rte.exact: Contains classes for solving the radiative transfer equation in an absorbing-emitting medium (no scattering) using a semi-analytical approach.
pulse.problem.schemes.solvers - package pulse.problem.schemes.solvers: Contains various finite-difference solvers for the different problem statements available.
pulse.problem.statements - package pulse.problem.statements: Introduces various problem statements for the heat conduction problem in the laser flash experiment.
pulse.problem.statements.model - package pulse.problem.statements.model
pulse.properties - package pulse.properties: Properties is PULsE are low-level entities used by the different Accessibles or PropertyHolders, such as SearchTasks, Problems, etc.
pulse.search - package pulse.search
pulse.search.direction - package pulse.search.direction: Provides a list of PathSolvers and associated classes, which are used to determine the direction of the minimum of a specific SearchTask using an iterative approach.
pulse.search.direction.pso - package pulse.search.direction.pso
pulse.search.linear - package pulse.search.linear: Provides classes that are able to search for the minimum of a scalar function of a vector variable that is unimodal on a specific Segment.
pulse.search.statistics - package pulse.search.statistics: PULsE Statistical Kit.
pulse.tasks - package pulse.tasks: Introduces the SearchTask, which is the main actor in PULsE, and the TaskManager, a high-level class which among other functions manages loading and executing SearchTasks.
pulse.tasks.listeners - package pulse.tasks.listeners: Contains various listeners that deal with events associated with the individual SearchTasks, their statuses, logging and result generation, as well as with the task repository events generated by a TaskManager.
pulse.tasks.logs - package pulse.tasks.logs: Lists classes for logging, storing runtime information including statuses.
pulse.tasks.processing - package pulse.tasks.processing: Lists classes for storing runtime information, storing and ordering of final execution results, storing intermediate results of execution to check convergence.
pulse.ui - package pulse.ui: Includes the Launcher class, which is the entry-point to PULsE.
pulse.ui.components - package pulse.ui.components: This package contains all custom Swing-based components of the graphical user interface of PULsE that are used to interact with all other entities, such as PropertyHolders, etc.
pulse.ui.components.buttons - package pulse.ui.components.buttons
pulse.ui.components.controllers - package pulse.ui.components.controllers
pulse.ui.components.listeners - package pulse.ui.components.listeners
pulse.ui.components.models - package pulse.ui.components.models
pulse.ui.components.panels - package pulse.ui.components.panels
pulse.ui.frames - package pulse.ui.frames: Contains all JFrame classes that are used to create the graphical user interface of PULsE.
pulse.ui.frames.dialogs - package pulse.ui.frames.dialogs
pulse.util - package pulse.util: Contains abstract data and hierarchical structures that implement much of the Java Reflection API.
Pulse2D - Class in pulse.problem.statements
Pulse2D() - Constructor for class pulse.problem.statements.Pulse2D: Creates a Pulse with default values of pulse width and laser spot diameter (as per XML specification).
Pulse2D(Pulse) - Constructor for class pulse.problem.statements.Pulse2D: Copy constructor
PulseChart - Class in pulse.ui.components
PulseChart(String, String) - Constructor for class pulse.ui.components.PulseChart
PulseDataReader - Interface in pulse.io.readers: A reader for importing numeric pulse data -- if available.
PulseMainMenu - Class in pulse.ui.components
PulseMainMenu() - Constructor for class pulse.ui.components.PulseMainMenu
pulseReaders() - Static method in class pulse.io.readers.ReaderManager
PulseTemporalShape - Class in pulse.problem.laser: An abstract time-dependent pulse shape.
PulseTemporalShape() - Constructor for class pulse.problem.laser.PulseTemporalShape
PulseTemporalShape(PulseTemporalShape) - Constructor for class pulse.problem.laser.PulseTemporalShape
pulseWidth() - Method in class pulse.problem.laser.NumericPulseData
pulseWidthGrid() - Method in class pulse.problem.laser.DiscretePulse: Optimises the Grid parameters so that the timestep is sufficiently small to enable accurate pulse correction.

Q

QUADRATURE_POINTS - pulse.properties.NumericPropertyKeyword: Number of quadrature points (RTE).
QuadratureReader - Class in pulse.io.readers: A reader, which converts quad files into instances OrdinateSet.
QUEUED - pulse.tasks.logs.Status: Task has been queued and is waiting to be executed.

R

R - Static variable in class pulse.problem.statements.model.Gas: Universal gas constant.
RADIAL_COATING_THICKNESS - pulse.properties.NumericPropertyKeyword: Not implemented yet.
radiance(double) - Method in class pulse.problem.schemes.rte.BlackbodySpectrum
radianceAt(double) - Method in class pulse.problem.schemes.rte.BlackbodySpectrum: Calculates the spectral radiance, which is equal to the spectral power divided by π, at the given coordinate.
radiationBiot() - Method in class pulse.problem.statements.model.ThermalProperties: Calculates the radiative Biot number.
RadiativeTransferCoupling - Class in pulse.problem.schemes
RadiativeTransferCoupling() - Constructor for class pulse.problem.schemes.RadiativeTransferCoupling
RadiativeTransferSolver - Class in pulse.problem.schemes.rte: Manages processes to solve the radiative transfer equation and generate the input needed by the heat problem, i.e.
RadiativeTransferSolver() - Constructor for class pulse.problem.schemes.rte.RadiativeTransferSolver: Dummy constructor.
random(int) - Method in class pulse.ui.ColorGenerator
random(int, double, double) - Static method in class pulse.math.linear.Vector: Creates a vector with random coordinates confined within [min;max]
randomise(ParameterVector) - Method in class pulse.search.direction.pso.ParticleState
Randomiser - Class in pulse.math.filters
Randomiser(double) - Constructor for class pulse.math.filters.Randomiser
randomValue() - Method in class pulse.math.Segment: Calculates a random value confined in the interval between the two ends of this Segment.
Range - Class in pulse.input: The actual physical range defined as a Segment with minimum and maximum values.
Range(double, double) - Constructor for class pulse.input.Range: Constructs a new Range based on the segment specified by a and b
Range(List<Double>) - Constructor for class pulse.input.Range: Constructs a Range from the minimum and maximum values of data.
RANGE_CHANGED - pulse.input.listeners.DataEventType: The RANGE_CHANGED DataEventType indicates the range of the ExperimentalData has either been truncated or extended.
RangePenalisedLeastSquares - Class in pulse.search.statistics: This is an experimental feature.
RangePenalisedLeastSquares() - Constructor for class pulse.search.statistics.RangePenalisedLeastSquares
RangePenalisedLeastSquares(RangePenalisedLeastSquares) - Constructor for class pulse.search.statistics.RangePenalisedLeastSquares
RangeTextFields - Class in pulse.ui.components: Two JFormattedTextFields used to display the range of the currently selected task.
RangeTextFields() - Constructor for class pulse.ui.components.RangeTextFields: Creates textfield objects, which may be accessed with getters from this instance.
RawDataExporter - Class in pulse.io.export: A wrapper singleton class that is made specifically to handle export requests of ExperimentalData.
read(File) - Method in interface pulse.io.readers.AbstractReader: Reads f to translate its contents to one of the immutable structures of T.
read(File) - Method in class pulse.io.readers.ButcherTableauReader: Reads the Butcher tableau stored in file.
read(File) - Method in interface pulse.io.readers.CurveReader: Basic operation for reading the file and converting this to a List of ExperimentalData objects.
read(File) - Method in interface pulse.io.readers.DatasetReader: Creates an InterpolationDataset using the dataset stored in the file.
read(File) - Method in class pulse.io.readers.DATReader: This will return a single ExperimentalData, which stores all the information available in the file, wrapped in a List object with the size of unity.
read(File) - Method in class pulse.io.readers.LFRReader: Reads through the file, identifies the names of other files with individual heating curves, theirs external IDs and test temperatures (in degrees Celsius, later converted to Kelvin).
read(File) - Method in class pulse.io.readers.NetzschCSVReader: Reads file, assuming that it contains data generated by Proteus with the detector signal.
read(File) - Method in class pulse.io.readers.NetzschPulseCSVReader: This performs a basic check, finding the shot ID, which is then passed to a new NumericPulseData object.The latter is populated using the time-power sequence stored in this file.If the "Laser_pulse_data" keyword is not found, the method will display an error.
read(File) - Method in interface pulse.io.readers.PulseDataReader: Converts the ASCII file to a NumericPulseData object.
read(File) - Method in class pulse.io.readers.QuadratureReader: Reads an ordinate set.
read(File) - Method in class pulse.io.readers.TBLReader: Reads through a file with .tbl extension, converting each row into an ImmutableDataEntry<Double,Double>, which is then added to a newly created InterpolationDataset.
read(List<? extends AbstractReader<T>>, File) - Static method in class pulse.io.readers.ReaderManager: Attempts to find a DatasetReader for processing file.
readDefaultXML() - Static method in class pulse.io.export.XMLConverter: The default XML file is specific in the 'messages.properties' text file in the pulse.ui package
readDirectory(List<AbstractReader<T>>, File) - Static method in class pulse.io.readers.ReaderManager: Obtains a set of files in directory and attemps to convert each file to T using readers.
ReaderManager - Class in pulse.io.readers: A ReaderManager is a single class that manages most input operations.
readSingleCurve(File, Metadata) - Method in class pulse.io.readers.LFRReader: Creates a single ExperimentalData object with the time-temperature information retrieved from file and using the previously generated Metadata object, containing the external ID and the test temperature of this heating curve.
readSplineFunction(ObjectInputStream) - Static method in class pulse.util.FunctionSerializer
readVersion() - Static method in class pulse.io.readers.ReaderManager
readXML(InputStream) - Static method in class pulse.io.export.XMLConverter: Utility method used to read NumericProperty constants from xml files.
READY - pulse.tasks.logs.Status: Everything seems to be in order and the task can now be executed.
RectangularMatrix - Class in pulse.math.linear
RectangularMatrix(double[][]) - Constructor for class pulse.math.linear.RectangularMatrix
RectangularMatrix(double[], int) - Constructor for class pulse.math.linear.RectangularMatrix
RectangularPulse - Class in pulse.problem.laser: The simplest pulse shape defined as $0.5*(1 +
sgn($ t_pulse - t)), where $sgn(...)$ is the signum function, _pulse is the pulse width.
RectangularPulse() - Constructor for class pulse.problem.laser.RectangularPulse
reduceStepSize() - Method in class pulse.problem.schemes.rte.dom.AdaptiveIntegrator
REFLECTANCE - pulse.properties.NumericPropertyKeyword: Reflectance of the sample (0 < R ≤ 1).
Reflexive - Interface in pulse.util: An object is declared Reflexive if PULsE needs to know all its available subclasses.
ReflexiveFinder - Class in pulse.util: Provides utility methods for finding classes and instances of Reflexive in a PULsE package.
RegularisedLeastSquares - Class in pulse.search.statistics: This is an experimental feature.
RegularisedLeastSquares() - Constructor for class pulse.search.statistics.RegularisedLeastSquares
RegularisedLeastSquares(RegularisedLeastSquares) - Constructor for class pulse.search.statistics.RegularisedLeastSquares
RELATIVE_TIME_MARGIN - Static variable in class pulse.tasks.Calculation
RELAXATION_PARAMETER - pulse.properties.NumericPropertyKeyword: Relaxation parameter of iterative solver (RTE).
remove(int) - Method in class pulse.AbstractData: Removes a time-value pair that is present under the index i.
remove(int) - Method in class pulse.HeatingCurve: Removes an element with the index i from all three Lists (time, signal, and baseline-corrected signal).
remove(AbstractResult) - Method in class pulse.ui.components.models.ResultTableModel
removeAll(Identifier) - Method in class pulse.ui.components.models.ResultTableModel
removeAllListeners() - Method in class pulse.ui.components.PulseMainMenu
removeAllListeners() - Method in class pulse.ui.frames.ResultFrame
removeElement(NumericPropertyKeyword) - Method in class pulse.ui.components.models.SelectedKeysModel
removeHierarchyListener(HierarchyListener) - Method in class pulse.util.UpwardsNavigable
removeHierarchyListeners() - Method in class pulse.util.UpwardsNavigable
removeListeners() - Method in class pulse.HeatingCurve
removeListeners() - Static method in class pulse.tasks.processing.ResultFormat
removeListeners() - Method in class pulse.ui.components.models.ResultTableModel
removeListeners() - Method in class pulse.ui.components.panels.TaskToolbar
removeListeners() - Method in class pulse.util.PropertyHolder
removeSelectedRows() - Method in class pulse.ui.components.TaskTable
removeSelectionListeners() - Method in class pulse.tasks.TaskManager
removeSessionListeners() - Static method in class pulse.tasks.TaskManager
removeStatusChangeListeners() - Method in class pulse.tasks.SearchTask
removeTask(Identifier) - Method in class pulse.ui.components.models.TaskTableModel
removeTask(SearchTask) - Method in class pulse.tasks.TaskManager: If t is found in the local repository, removes it and triggers a TASK_REMOVED event.
removeTaskListeners() - Method in class pulse.tasks.SearchTask
removeTaskRepositoryListener(TaskRepositoryListener) - Method in class pulse.tasks.TaskManager
requireType(NumericProperty, NumericPropertyKeyword) - Static method in class pulse.properties.NumericProperty
RESCALED - pulse.input.listeners.CurveEventType: Indicates the curve signal values have been re-scaled.
reset() - Static method in class pulse.search.direction.ActiveFlags
reset() - Method in class pulse.search.direction.GradientBasedOptimiser: Resets the default ITERATION_LIMIT, ERROR_TOLERANCE and GRADIENT_RESOLUTION values for this PathSolver.
reset() - Method in class pulse.search.direction.IterativeState
reset() - Method in class pulse.search.direction.PathOptimiser: Resets the default ITERATION_LIMIT, ERROR_TOLERANCE and GRADIENT_RESOLUTION values for this PathSolver.
reset() - Method in class pulse.tasks.TaskManager: Clears any progress for all the tasks and resets everything.
reset() - Method in class pulse.ui.components.PulseMainMenu
reset(List<Double>) - Method in class pulse.input.IndexRange: Resets the index range by effectively treating the data list as bounded by its first and last elements, assuming that data is sorted in ascending order.
reset(IndexRange, List<Double>) - Method in class pulse.input.Range: Resets the minimum and maximum values of this range to those specified by the elements of data, the indices of which correspond to the lower and upper bound of the IndexRange.
resetFailedAttempts() - Method in class pulse.search.direction.IterativeState
resetRanges() - Method in class pulse.input.ExperimentalData: Calls reset for both the IndexRange and Range objects using the current time sequence.
resetSession() - Method in class pulse.ui.components.buttons.ExecutionButton
resetSession() - Method in class pulse.ui.components.models.ResultTableModel
resetSession() - Method in class pulse.ui.components.models.TaskTableModel
resetSession() - Method in class pulse.ui.components.panels.TaskToolbar
resetSession() - Method in class pulse.ui.components.ResultTable
resetSession() - Method in class pulse.ui.components.TaskTable
resetSession() - Method in class pulse.ui.frames.ModelSelectionFrame
resetSession() - Method in class pulse.ui.frames.ProblemStatementFrame
resetSession() - Method in class pulse.ui.frames.TaskControlFrame
resetSession() - Method in class pulse.ui.frames.TaskManagerFrame
residuals(Calculation) - Method in class pulse.ui.components.Chart
residualsArray() - Method in class pulse.search.statistics.ResidualStatistic
ResidualsChart - Class in pulse.ui.components
ResidualsChart(String, String) - Constructor for class pulse.ui.components.ResidualsChart
ResidualStatistic - Class in pulse.search.statistics: An abstract statistic (= a numeric value resulting from a statistical procedure) that operates with model residuals.
ResidualStatistic() - Constructor for class pulse.search.statistics.ResidualStatistic
ResidualStatistic(ResidualStatistic) - Constructor for class pulse.search.statistics.ResidualStatistic
ResidualStatisticExporter - Class in pulse.io.export: Exports the residuals, where each residual value refers to a specific point in time.
resolvedPulseWidthSeconds() - Method in class pulse.problem.laser.DiscretePulse: Gets the minimal resolved pulse width defined by the WIDTH_TOLERANCE_FACTOR and the characteristic time given by the getConversionFactor.
ResourceMonitor - Class in pulse.util: Provides unified means of storage and methods of access to runtime system information, such as CPU usage, memory usage, an number of available threads.
Response - Interface in pulse
Result - Class in pulse.tasks.processing: The individual Result that is associated with a SearchTask.
Result(Result) - Constructor for class pulse.tasks.processing.Result
Result(SearchTask, ResultFormat) - Constructor for class pulse.tasks.processing.Result: Creates an individual Result related to the current state of task using the specified format.
ResultChangeDialog - Class in pulse.ui.frames.dialogs
ResultChangeDialog() - Constructor for class pulse.ui.frames.dialogs.ResultChangeDialog
ResultExporter - Class in pulse.io.export: Provides export capabilities, for instances, of the Result class both in the csv and html formats.
ResultFormat - Class in pulse.tasks.processing: A singleton ResultFormat, which contains a list of NumericPropertyKeywords used for identification of NumericProperties.
resultFormatChanged(ResultFormatEvent) - Method in interface pulse.tasks.listeners.ResultFormatListener
ResultFormatEvent - Class in pulse.tasks.listeners
ResultFormatEvent(ResultFormat) - Constructor for class pulse.tasks.listeners.ResultFormatEvent
ResultFormatListener - Interface in pulse.tasks.listeners
ResultFrame - Class in pulse.ui.frames
ResultFrame() - Constructor for class pulse.ui.frames.ResultFrame
ResultListener - Interface in pulse.ui.components.listeners
ResultRequestListener - Interface in pulse.ui.components.listeners
ResultTable - Class in pulse.ui.components
ResultTable(ResultFormat) - Constructor for class pulse.ui.components.ResultTable
ResultTableExporter - Class in pulse.io.export: A singleton Exporter which can process the results table.
ResultTableModel - Class in pulse.ui.components.models
ResultTableModel(ResultFormat) - Constructor for class pulse.ui.components.models.ResultTableModel
ResultTableModel(ResultFormat, int) - Constructor for class pulse.ui.components.models.ResultTableModel
ResultToolbar - Class in pulse.ui.components.panels
ResultToolbar() - Constructor for class pulse.ui.components.panels.ResultToolbar
retrieveData(ExperimentalData) - Method in class pulse.problem.statements.NonlinearProblem
retrieveData(ExperimentalData) - Method in class pulse.problem.statements.Problem: This will use the data contained in c to estimate the detector signal span and the thermal diffusivity for this Problem.
RING - Static variable in class pulse.search.direction.pso.StaticTopologies: Ring topology (1D - lattice)
roots() - Method in class pulse.math.LegendrePoly: Uses a LaguerreSolver to calculate the roots of this polynomial.
RSquaredTest - Class in pulse.search.statistics: The coefficient of determination represents the goodness of fit that a HeatingCurve provides for the ExperimentalData
RSquaredTest() - Constructor for class pulse.search.statistics.RSquaredTest
RTE_INTEGRATION_TIMEOUT - pulse.properties.NumericPropertyKeyword: Maximum allowed time spent on integration (RTE).
RTE_MAX_ITERATIONS - pulse.properties.NumericPropertyKeyword: Iteration threshold for RTE calculations.
RTE_SOLVER_ERROR - pulse.problem.schemes.solvers.SolverException.SolverExceptionType
RTECalculationListener - Interface in pulse.problem.schemes.rte: Used to listed to status updates in RadiativeTransferSolver subclasses.
RTECalculationStatus - Enum in pulse.problem.schemes.rte: A measure of health for radiative transfer calculations.
RTOL - pulse.properties.NumericPropertyKeyword: Relative tolerance (atol) for RK calculations (RTE).
run() - Method in class pulse.search.GeneralTask: Runs this task if is either READY or QUEUED.
run() - Method in class pulse.search.SimpleOptimisationTask
run() - Method in class pulse.tasks.SearchTask
RunningAverage - Class in pulse.math.filters
RunningAverage() - Constructor for class pulse.math.filters.RunningAverage
RunningAverage(int) - Constructor for class pulse.math.filters.RunningAverage
runTimeSequence(Problem) - Method in class pulse.problem.schemes.DifferenceScheme
runTimeSequence(Problem, double, double) - Method in class pulse.problem.schemes.DifferenceScheme

S

sample(double) - Method in class pulse.ui.ColorGenerator
SampleName - Class in pulse.properties
SampleName(String) - Constructor for class pulse.properties.SampleName
sampling(double[]) - Method in class pulse.math.FFTTransformer
sanityCheck(RTECalculationStatus, int) - Method in class pulse.problem.schemes.rte.dom.IterativeSolver
scale(double) - Method in class pulse.HeatingCurve: Scales the temperature values by a factor of scale.
scaleSolution(Problem) - Method in class pulse.problem.schemes.DifferenceScheme
SCATTERING_ALBEDO - pulse.properties.NumericPropertyKeyword: Albedo of single scattering.
SCATTERING_ANISOTROPY - pulse.properties.NumericPropertyKeyword: Anisotropy coefficient for the phase function of scattering.
scheduleLogEvents() - Method in class pulse.ui.frames.LogFrame
SCHEME_WEIGHT - pulse.properties.NumericPropertyKeyword: Weight of the semi-implicit finite-difference scheme.
ScientificFormat - Class in pulse.properties
ScientificFormat(Number, Number) - Constructor for class pulse.properties.ScientificFormat
SEARCH - pulse.ui.frames.TaskControlFrame.Mode
SEARCH_STATISTIC_COLUMN - Static variable in class pulse.ui.components.models.TaskTableModel
SearchListRenderer - Class in pulse.ui.components.controllers
SearchListRenderer() - Constructor for class pulse.ui.components.controllers.SearchListRenderer
SearchOptionsFrame - Class in pulse.ui.frames
SearchOptionsFrame() - Constructor for class pulse.ui.frames.SearchOptionsFrame: Create the frame.
searchResolution - Static variable in class pulse.search.linear.LinearOptimiser
searchRow(Identifier) - Method in class pulse.ui.components.models.TaskTableModel
SearchTask - Class in pulse.tasks: A SearchTask is the most important class in PULsE.
SearchTask(ExperimentalData) - Constructor for class pulse.tasks.SearchTask: Creates a new SearchTask from curve.
searchVector() - Method in class pulse.math.filters.PolylineOptimiser
searchVector() - Method in class pulse.search.GeneralTask: Creates a search vector populated by parameters that are included in the optimisation routine.
searchVector() - Method in class pulse.search.SimpleOptimisationTask: Generates a search vector (= optimisation vector) using the search flags set by the PathSolver.
searchVector() - Method in class pulse.tasks.SearchTask: Generates a search vector (= optimisation vector) using the search flags set by the PathSolver.
Segment - Class in pulse.math: A Segment is simply a pair of values a and b such that a < b.
Segment(double, double) - Constructor for class pulse.math.Segment: Creates a Segment bounded by a and b.
Segment(Segment) - Constructor for class pulse.math.Segment: Copies segment
select(Result) - Method in class pulse.ui.components.ResultTable
select(SearchTask) - Method in class pulse.ui.components.ResultTable
selectActive(List<Flag>) - Static method in class pulse.properties.Flag
selectActiveAndListed(List<Flag>, PropertyHolder) - Static method in class pulse.search.direction.ActiveFlags
selectActiveTypes(List<Flag>) - Static method in class pulse.search.direction.ActiveFlags
SELECTED - pulse.ui.components.MovableValueMarker.State
SELECTED_STROKE - Static variable in class pulse.ui.components.MovableValueMarker
SelectedKeysModel - Class in pulse.ui.components.models
SelectedKeysModel(List<NumericPropertyKeyword>, NumericPropertyKeyword[]) - Constructor for class pulse.ui.components.models.SelectedKeysModel
selectedTask - Variable in class pulse.ui.components.models.TaskBoxModel
selectFirstTask() - Method in class pulse.tasks.TaskManager
selectTask(Identifier, Object) - Method in class pulse.tasks.TaskManager: Selects a SearchTask within this repository with the specified id (if present).
serialize() - Static method in class pulse.util.Serializer
serialize(File) - Static method in class pulse.util.Serializer
Serializer - Class in pulse.util
series(HeatingCurve, String, boolean) - Method in class pulse.ui.components.Chart
series(ExperimentalData, String, boolean) - Method in class pulse.ui.components.Chart
SessionListener - Interface in pulse.tasks.listeners
set(int, double) - Method in class pulse.math.linear.Vector: Sets the component of this Vector specified by index to value.
set(List<Double>, Range) - Method in class pulse.input.IndexRange: Sets the bounds of this index range using the minimum and maximum values of the segment specified in the range object.
set(NumericPropertyKeyword, NumericProperty) - Method in class pulse.AbstractData: Provides general setter accessibility for the number of points of this AbstractData.
set(NumericPropertyKeyword, NumericProperty) - Method in class pulse.baseline.AdjustableBaseline
set(NumericPropertyKeyword, NumericProperty) - Method in class pulse.baseline.LinearBaseline
set(NumericPropertyKeyword, NumericProperty) - Method in class pulse.baseline.SinusoidalBaseline
set(NumericPropertyKeyword, NumericProperty) - Method in class pulse.HeatingCurve: Calls super.set and provides write access to the TIME_SHIFT property.
set(NumericPropertyKeyword, NumericProperty) - Method in class pulse.input.Metadata: If type is listed by this Metadata, will attempt to either set a value to the property belonging to this Metadata and identified by type or add property to the internal repository of this Metadata.
set(NumericPropertyKeyword, NumericProperty) - Method in class pulse.input.Range
set(NumericPropertyKeyword, NumericProperty) - Method in class pulse.math.filters.OptimisablePolyline
set(NumericPropertyKeyword, NumericProperty) - Method in class pulse.math.FixedIntervalIntegrator
set(NumericPropertyKeyword, NumericProperty) - Method in class pulse.math.Harmonic
set(NumericPropertyKeyword, NumericProperty) - Method in class pulse.problem.laser.ExponentiallyModifiedGaussian
set(NumericPropertyKeyword, NumericProperty) - Method in class pulse.problem.laser.NumericPulse: Does not define any property.
set(NumericPropertyKeyword, NumericProperty) - Method in class pulse.problem.laser.RectangularPulse
set(NumericPropertyKeyword, NumericProperty) - Method in class pulse.problem.laser.TrapezoidalPulse
set(NumericPropertyKeyword, NumericProperty) - Method in class pulse.problem.schemes.DifferenceScheme
set(NumericPropertyKeyword, NumericProperty) - Method in class pulse.problem.schemes.Grid
set(NumericPropertyKeyword, NumericProperty) - Method in class pulse.problem.schemes.RadiativeTransferCoupling
set(NumericPropertyKeyword, NumericProperty) - Method in class pulse.problem.schemes.rte.dom.AdaptiveIntegrator
set(NumericPropertyKeyword, NumericProperty) - Method in class pulse.problem.schemes.rte.dom.DiscreteOrdinatesMethod
set(NumericPropertyKeyword, NumericProperty) - Method in class pulse.problem.schemes.rte.dom.Discretisation
set(NumericPropertyKeyword, NumericProperty) - Method in class pulse.problem.schemes.rte.dom.IterativeSolver
set(NumericPropertyKeyword, NumericProperty) - Method in class pulse.problem.schemes.rte.dom.StretchedGrid
set(NumericPropertyKeyword, NumericProperty) - Method in class pulse.problem.schemes.rte.dom.SuccessiveOverrelaxation
set(NumericPropertyKeyword, NumericProperty) - Method in class pulse.problem.schemes.rte.exact.ChandrasekharsQuadrature
set(NumericPropertyKeyword, NumericProperty) - Method in class pulse.problem.schemes.rte.exact.NewtonCotesQuadrature
set(NumericPropertyKeyword, NumericProperty) - Method in class pulse.problem.schemes.rte.exact.NonscatteringRadiativeTransfer
set(NumericPropertyKeyword, NumericProperty) - Method in class pulse.problem.schemes.solvers.ExplicitCoupledSolverNL
set(NumericPropertyKeyword, NumericProperty) - Method in class pulse.problem.schemes.solvers.ExplicitNonlinearSolver
set(NumericPropertyKeyword, NumericProperty) - Method in class pulse.problem.schemes.solvers.ImplicitCoupledSolverNL
set(NumericPropertyKeyword, NumericProperty) - Method in class pulse.problem.schemes.solvers.ImplicitNonlinearSolver
set(NumericPropertyKeyword, NumericProperty) - Method in class pulse.problem.schemes.solvers.ImplicitTwoTemperatureSolver
set(NumericPropertyKeyword, NumericProperty) - Method in class pulse.problem.schemes.solvers.MixedCoupledSolver
set(NumericPropertyKeyword, NumericProperty) - Method in class pulse.problem.schemes.solvers.MixedCoupledSolverNL
set(NumericPropertyKeyword, NumericProperty) - Method in class pulse.problem.statements.ClassicalProblem
set(NumericPropertyKeyword, NumericProperty) - Method in class pulse.problem.statements.model.AbsorptionModel
set(NumericPropertyKeyword, NumericProperty) - Method in class pulse.problem.statements.model.DiathermicProperties
set(NumericPropertyKeyword, NumericProperty) - Method in class pulse.problem.statements.model.ExtendedThermalProperties
set(NumericPropertyKeyword, NumericProperty) - Method in class pulse.problem.statements.model.Insulator
set(NumericPropertyKeyword, NumericProperty) - Method in class pulse.problem.statements.model.ThermalProperties: Used to change the parameter values of this Problem.
set(NumericPropertyKeyword, NumericProperty) - Method in class pulse.problem.statements.model.ThermoOpticalProperties
set(NumericPropertyKeyword, NumericProperty) - Method in class pulse.problem.statements.model.TwoTemperatureProperties: Used to change the parameter values of this Problem.
set(NumericPropertyKeyword, NumericProperty) - Method in class pulse.problem.statements.Problem: Used to change the parameter values of this Problem.
set(NumericPropertyKeyword, NumericProperty) - Method in class pulse.problem.statements.Pulse
set(NumericPropertyKeyword, NumericProperty) - Method in class pulse.problem.statements.Pulse2D
set(NumericPropertyKeyword, NumericProperty) - Method in class pulse.search.direction.GradientBasedOptimiser: The accepted types are: GRADIENT_RESOLUTION, ERROR_TOLERANCE, ITERATION_LIMIT.
set(NumericPropertyKeyword, NumericProperty) - Method in class pulse.search.direction.LMOptimiser
set(NumericPropertyKeyword, NumericProperty) - Method in class pulse.search.direction.PathOptimiser: The accepted types are: ERROR_TOLERANCE, ITERATION_LIMIT.
set(NumericPropertyKeyword, NumericProperty) - Method in class pulse.search.linear.LinearOptimiser
set(NumericPropertyKeyword, NumericProperty) - Method in class pulse.search.SimpleOptimisationTask
set(NumericPropertyKeyword, NumericProperty) - Method in class pulse.search.statistics.CorrelationTest
set(NumericPropertyKeyword, NumericProperty) - Method in class pulse.search.statistics.ModelSelectionCriterion
set(NumericPropertyKeyword, NumericProperty) - Method in class pulse.search.statistics.NormalityTest
set(NumericPropertyKeyword, NumericProperty) - Method in class pulse.search.statistics.ResidualStatistic
set(NumericPropertyKeyword, NumericProperty) - Method in class pulse.tasks.Calculation
set(NumericPropertyKeyword, NumericProperty) - Method in class pulse.tasks.processing.Buffer
set(NumericPropertyKeyword, NumericProperty) - Method in class pulse.tasks.SearchTask
set(NumericPropertyKeyword, NumericProperty) - Method in class pulse.util.Accessible: An abstract method, which must be overriden to gain access over setting the values of all relevant (selected by the programmer) NumericProperties in subclasses of Accessible.
setAbbreviation(String) - Method in class pulse.properties.Flag
setAbbreviation(String) - Method in class pulse.properties.NumericProperty
setAbsoluteTolerance(NumericProperty) - Method in class pulse.problem.schemes.rte.dom.AdaptiveIntegrator
setAbsorptionModel(AbsorptionModel) - Method in class pulse.problem.statements.PenetrationProblem
setAbsorptivity(SpectralRange, NumericProperty) - Method in class pulse.problem.statements.model.AbsorptionModel
setAlpha(int, double) - Method in class pulse.problem.schemes.TridiagonalMatrixAlgorithm
setAmplitude(NumericProperty) - Method in class pulse.math.Harmonic
setAutoUpdateFluxes(boolean) - Method in class pulse.problem.schemes.CoupledImplicitScheme
setAutoUpdateFluxes(boolean) - Method in class pulse.problem.schemes.solvers.ExplicitCoupledSolver
setAxisFontColor(Axis, Color) - Static method in class pulse.ui.components.Chart
setBaseline(Baseline) - Method in class pulse.problem.statements.Problem: Sets a new baseline.
setBestSoFar(ParticleState) - Method in class pulse.search.direction.pso.SwarmState
setBestSoFarIndex(int) - Method in class pulse.search.direction.pso.SwarmState
setBeta(int, double) - Method in class pulse.problem.schemes.TridiagonalMatrixAlgorithm
setBinCount(int) - Method in class pulse.ui.components.ResidualsChart
setBounds(Segment) - Method in class pulse.math.AbstractIntegrator: Simply sets the integration bounds to bounds
setBounds(Segment) - Method in class pulse.math.FixedIntervalIntegrator: Sets the bounds to the argument and re-evaluates the integration step size.
setBounds(Segment) - Method in class pulse.math.Parameter
setBounds(Segment) - Method in class pulse.math.transforms.BoundedParameterTransform
setButcherTableau(ButcherTableau) - Method in class pulse.problem.schemes.rte.dom.ExplicitRungeKutta
setC(Vector) - Method in class pulse.problem.schemes.rte.dom.ButcherTableau
setCalculationStatus(RTECalculationStatus) - Method in class pulse.problem.schemes.CoupledImplicitScheme
setCalculationStatus(RTECalculationStatus) - Method in class pulse.problem.schemes.solvers.ExplicitCoupledSolver
setChart(JFreeChart) - Method in class pulse.ui.components.AuxPlotter
setClearEnabled(boolean) - Method in class pulse.ui.components.panels.TaskToolbar
setCoefA(double) - Method in class pulse.problem.schemes.TridiagonalMatrixAlgorithm
setCoefB(double) - Method in class pulse.problem.schemes.TridiagonalMatrixAlgorithm
setCoefC(double) - Method in class pulse.problem.schemes.TridiagonalMatrixAlgorithm
setCoefficients(double, double) - Method in class pulse.problem.schemes.rte.exact.CompositionProduct
setCombinedAbsorptivity(NumericProperty) - Method in class pulse.problem.statements.model.AbsorptionModel
setCombinedLosses(NumericProperty) - Method in class pulse.problem.statements.model.ExtendedThermalProperties
setComplexity(ProblemComplexity) - Method in class pulse.problem.statements.Problem
setConfirmAction(ConfirmAction) - Method in class pulse.ui.frames.dialogs.FormattedInputDialog
setConvectiveLosses(NumericProperty) - Method in class pulse.problem.statements.model.DiathermicProperties
setConvectiveLosses(NumericProperty) - Method in class pulse.problem.statements.model.ThermoOpticalProperties
setCost(double) - Method in class pulse.search.direction.IterativeState
setCoupling(RadiativeTransferCoupling) - Method in class pulse.problem.schemes.CoupledImplicitScheme
setCoupling(RadiativeTransferCoupling) - Method in class pulse.problem.schemes.solvers.ExplicitCoupledSolver
setCutoff(NumericProperty) - Method in class pulse.problem.schemes.rte.exact.NewtonCotesQuadrature
setDampingRatio(NumericProperty) - Method in class pulse.search.direction.LMOptimiser
setData(NumericPulseData) - Method in class pulse.problem.laser.NumericPulse
setDefaultLocale() - Method in class pulse.io.readers.NetzschCSVReader
setDefaultOptimiser() - Method in class pulse.math.filters.PolylineOptimiser
setDefaultOptimiser() - Method in class pulse.search.GeneralTask
setDefaultOptimiser() - Method in class pulse.search.SimpleOptimisationTask
setDefaultSearchVariable(boolean) - Method in class pulse.properties.NumericProperty
setDefaultSelection(String) - Method in class pulse.util.DiscreteSelector
setDeleteEnabled(boolean) - Method in class pulse.ui.components.panels.ResultToolbar
setDensity(NumericProperty) - Method in class pulse.problem.schemes.rte.Fluxes
setDensity(NumericProperty) - Method in class pulse.problem.statements.model.ThermalProperties
setDensityDataset(InterpolationDataset) - Method in class pulse.tasks.TaskManager
setDerivative(int, int, double) - Method in class pulse.problem.schemes.rte.dom.DiscreteQuantities
setDescriptor(String) - Method in class pulse.properties.NumericProperty
setDetailedMessage(String) - Method in enum pulse.tasks.logs.Status
setDetails(Details) - Method in enum pulse.tasks.logs.Status
setDetailsHidden(boolean) - Static method in class pulse.problem.schemes.DifferenceScheme: Changes the policy of displaying a detailed information about this scheme.
setDetailsHidden(boolean) - Static method in class pulse.problem.statements.Problem: Allows to either hide or display all 'advanced' settings for this Problem.
setDiathermicCoefficient(NumericProperty) - Method in class pulse.problem.statements.model.DiathermicProperties
setDiffusivity(NumericProperty) - Method in class pulse.problem.statements.model.ThermalProperties
setDimensionFactor(Number) - Method in class pulse.properties.NumericProperty
setDirection(Vector) - Method in class pulse.search.direction.GradientGuidedPath
setDiscrete(boolean) - Method in class pulse.properties.NumericProperty
setDiscretisation(Discretisation) - Method in class pulse.problem.schemes.rte.dom.ODEIntegrator
setDomain(Number, Number) - Method in class pulse.properties.NumericProperty: Sets the definition domain for this NumericProperty.
setDrawSmooth(boolean) - Method in class pulse.ui.frames.PreviewFrame
setEmissionFunction(BlackbodySpectrum) - Method in class pulse.problem.schemes.rte.dom.ODEIntegrator
setEmissionFunction(BlackbodySpectrum) - Method in class pulse.problem.schemes.rte.exact.CompositionProduct
setEmissionFunction(BlackbodySpectrum) - Method in class pulse.problem.schemes.rte.exact.NonscatteringRadiativeTransfer
setEmissivity(double) - Method in class pulse.problem.schemes.rte.dom.Discretisation
setEmissivity(NumericProperty) - Method in class pulse.problem.statements.model.ThermalProperties
setError(Number) - Method in class pulse.properties.NumericProperty
setErrorTolerance(NumericProperty) - Method in class pulse.search.direction.PathOptimiser
setEstimator(Vector) - Method in class pulse.problem.schemes.rte.dom.ButcherTableau
setExcludeKeywords(NumericPropertyKeyword[]) - Method in class pulse.properties.NumericProperty
setExecEnabled(boolean) - Method in class pulse.ui.components.panels.TaskToolbar
setExecutionState(ExecutionButton.ExecutionState) - Method in class pulse.ui.components.buttons.ExecutionButton
setExperimentalCurve(ExperimentalData) - Method in class pulse.tasks.SearchTask: Adopts the curve by this SearchTask.
setExportEnabled(boolean) - Method in class pulse.ui.components.panels.ResultToolbar
setFirstRun(boolean) - Method in class pulse.problem.schemes.rte.dom.AdaptiveIntegrator
setFitness(double) - Method in class pulse.search.direction.pso.ParticleState
setFlux(int, double) - Method in class pulse.problem.schemes.rte.Fluxes: Sets the flux at the i grid point
setFluxDerivative(int, double) - Method in class pulse.problem.schemes.rte.FluxesAndExplicitDerivatives
setFluxes(Fluxes) - Method in class pulse.problem.schemes.rte.RadiativeTransferSolver
setFonts() - Method in class pulse.ui.components.AuxPlotter
setFormat(ResultFormat) - Method in class pulse.tasks.processing.AbstractResult
setFOVInner(NumericProperty) - Method in class pulse.problem.statements.model.ExtendedThermalProperties
setFOVOuter(NumericProperty) - Method in class pulse.problem.statements.model.ExtendedThermalProperties
setFrequency(NumericProperty) - Method in class pulse.math.Harmonic
setGamma(int, double) - Method in class pulse.problem.schemes.BlockMatrixAlgorithm
setGas(Gas) - Method in class pulse.problem.statements.TwoTemperatureModel
setGasExchangeCoefficient(NumericProperty) - Method in class pulse.problem.statements.model.TwoTemperatureProperties
setGasHeatLoss(NumericProperty) - Method in class pulse.problem.statements.model.TwoTemperatureProperties
setGeometricFactor(NumericProperty) - Method in class pulse.problem.statements.ClassicalProblem
setGradient(Vector) - Method in class pulse.search.direction.GradientGuidedPath
setGradientResolution(NumericProperty) - Method in class pulse.search.direction.GradientBasedOptimiser
setGraphEnabled(boolean) - Method in class pulse.ui.components.panels.TaskToolbar
setGraphicalLog(boolean) - Static method in class pulse.tasks.logs.Log: Sets the verbose flag to verbose
setGrid(Grid) - Method in class pulse.problem.schemes.DifferenceScheme: Sets the grid and adopts it as its child.
setGrid(StretchedGrid) - Method in class pulse.problem.schemes.rte.dom.Discretisation
setGridDensity(NumericProperty) - Method in class pulse.problem.schemes.Grid: Sets the value of the gridDensity.
setGridDensity(NumericProperty) - Method in class pulse.problem.schemes.Grid2D: Sets the value of the gridDensity.
setGridDensityValue(int) - Method in class pulse.problem.schemes.Grid
setGridDensityValue(int) - Method in class pulse.problem.schemes.Grid2D
setGridScalingFactor(NumericProperty) - Method in class pulse.problem.schemes.rte.dom.AdaptiveIntegrator
setHeatingCurve(HeatingCurve) - Method in class pulse.problem.statements.Problem
setHeatLoss(NumericProperty) - Method in class pulse.problem.statements.model.ThermalProperties
setHessian(SquareMatrix) - Method in class pulse.search.direction.ComplexPath
setHiFreqMax(NumericProperty) - Method in class pulse.baseline.SinusoidalBaseline
setInstance(PathOptimiser) - Static method in class pulse.search.direction.PathOptimiser
setIntegrationSegments(NumericProperty) - Method in class pulse.math.FixedIntervalIntegrator: Sets the number of integration segments and re-evaluates the integration step size.
setIntegrator(AdaptiveIntegrator) - Method in class pulse.problem.schemes.rte.dom.DiscreteOrdinatesMethod
setIntensity(int, int, double) - Method in class pulse.problem.schemes.rte.dom.DiscreteQuantities
setIntercept(NumericProperty) - Method in class pulse.baseline.AdjustableBaseline: Checks whether intercept is a baseline intercept property and updates the respective value of this baseline.
setInterpolation(UnivariateFunction) - Method in class pulse.problem.schemes.rte.BlackbodySpectrum: Sets a new function for the spatial temperature profile.
setInterpolator(Vector) - Method in class pulse.problem.schemes.rte.dom.ButcherTableau
setInverseHessian(SquareMatrix) - Method in class pulse.search.direction.ComplexPath
setIterationErrorTolerance(NumericProperty) - Method in class pulse.problem.schemes.rte.dom.IterativeSolver
setIterativeSolver(IterativeSolver) - Method in class pulse.problem.schemes.rte.dom.DiscreteOrdinatesMethod
setIterativeState(IterativeState) - Method in class pulse.search.GeneralTask
setLambda(double) - Method in class pulse.search.statistics.RangePenalisedLeastSquares
setLambda(double) - Method in class pulse.search.statistics.RegularisedLeastSquares
setLambda(NumericProperty) - Method in class pulse.problem.laser.ExponentiallyModifiedGaussian: Sets the SKEW_LAMBDA parameter
setLaserAbsorptivity(NumericProperty) - Method in class pulse.problem.statements.model.AbsorptionModel
setLaserEnergy(NumericProperty) - Method in class pulse.problem.statements.Pulse
setLinearResolution(NumericProperty) - Static method in class pulse.search.linear.LinearOptimiser
setLinearSolver(LinearOptimiser) - Method in class pulse.search.direction.CompositePathOptimiser: Assigns a LinearSolver to this PathSolver and sets this object as its parent.
setLinearStep(double) - Method in class pulse.search.direction.GradientGuidedPath
setLowerBound(List<Double>, double) - Method in class pulse.input.IndexRange: Sets the start index by conducting a primitive binary search using closest(...) to find an element in data either matching or being as close as possible to a (if a is non-negative) or zero.
setLowerBound(NumericProperty) - Method in class pulse.input.Range: Sets the lower bound and triggers firePropertyChanged.
setLowFreqMax(NumericProperty) - Method in class pulse.baseline.SinusoidalBaseline
setMatrix(SquareMatrix) - Method in class pulse.problem.schemes.rte.dom.ButcherTableau
setMaximum(double) - Method in class pulse.math.Segment: Sets the maximum value to b.
setMaximumTemperature(NumericProperty) - Method in class pulse.problem.statements.model.ThermalProperties
setMaxIterations(NumericProperty) - Method in class pulse.problem.schemes.rte.dom.IterativeSolver
setMaxIterations(NumericProperty) - Method in class pulse.search.direction.PathOptimiser
setMergeEnabled(boolean) - Method in class pulse.ui.components.panels.ResultToolbar
setMetadata(Metadata) - Method in class pulse.input.ExperimentalData: Sets a new Metadata object for this ExperimentalData.
setMinimum(double) - Method in class pulse.math.Segment: Sets the minimum value to a.
setModelSelectionCriterion(ModelSelectionCriterion) - Method in class pulse.tasks.Calculation
setMu(NumericProperty) - Method in class pulse.problem.laser.ExponentiallyModifiedGaussian: Sets the SKEW_MU parameter
setName(String) - Method in class pulse.AbstractData
setName(String) - Method in class pulse.problem.schemes.rte.dom.OrdinateSet
setNeighborhoodTopology(NeighbourhoodTopology) - Method in class pulse.search.direction.pso.SwarmState
setNonlinearPrecision(NumericProperty) - Method in class pulse.problem.schemes.solvers.ExplicitCoupledSolverNL
setNonlinearPrecision(NumericProperty) - Method in class pulse.problem.schemes.solvers.ExplicitNonlinearSolver
setNonlinearPrecision(NumericProperty) - Method in class pulse.problem.schemes.solvers.ImplicitCoupledSolverNL
setNonlinearPrecision(NumericProperty) - Method in class pulse.problem.schemes.solvers.ImplicitNonlinearSolver
setNonlinearPrecision(NumericProperty) - Method in class pulse.problem.schemes.solvers.ImplicitTwoTemperatureSolver
setNonlinearPrecision(NumericProperty) - Method in class pulse.problem.schemes.solvers.MixedCoupledSolverNL
setNumberOfBins(int) - Method in class pulse.math.filters.RunningAverage
setNumPoints(NumericProperty) - Method in class pulse.AbstractData: Sets the number of points for this baseline.
setOpacity(float) - Method in class pulse.ui.components.Chart
setOpticalThickness(NumericProperty) - Method in class pulse.problem.schemes.rte.Fluxes
setOpticalThickness(NumericProperty) - Method in class pulse.problem.statements.model.ThermoOpticalProperties
setOptimisable(boolean) - Method in class pulse.properties.NumericProperty
setOptimiser(PathOptimiser) - Method in class pulse.search.GeneralTask
setOptimiserStatistic(OptimiserStatistic) - Method in class pulse.search.SimpleResponse
setOptimiserStatistic(OptimiserStatistic) - Method in class pulse.search.statistics.ModelSelectionCriterion
setOptimiserStatistic(OptimiserStatistic) - Method in class pulse.tasks.Calculation
setOrder(int) - Method in class pulse.problem.schemes.rte.exact.CompositionProduct: Sets the integration order n.
setOrdinateSet(OrdinateSet) - Method in class pulse.problem.schemes.rte.dom.Discretisation
setParameterBounds(Segment) - Method in class pulse.math.FunctionWithInterpolation: Sets the parameter bounds to parameterBounds.
setParameters(ParameterVector) - Method in class pulse.search.direction.IterativeState
setParent(UpwardsNavigable) - Method in class pulse.util.UpwardsNavigable: Explicitly sets the parent of this UpwardsNavigable.
setParticles(Particle[]) - Method in class pulse.search.direction.pso.SwarmState
setPhaseFunction(PhaseFunction) - Method in class pulse.problem.schemes.rte.dom.ODEIntegrator
setPhaseShift(NumericProperty) - Method in class pulse.math.Harmonic
setPlanckNumber(NumericProperty) - Method in class pulse.problem.statements.model.ThermoOpticalProperties
setPlot(XYPlot) - Method in class pulse.ui.components.AuxPlotter
setPrefix(String) - Method in class pulse.util.PropertyHolder
setPreviewEnabled(boolean) - Method in class pulse.ui.components.panels.ResultToolbar
setProblem(Problem) - Method in class pulse.ui.components.listeners.ProblemSelectionEvent
setProblem(Problem, ExperimentalData) - Method in class pulse.tasks.Calculation: After setting and adopting the problem by this SearchTask, this will attempt to change the parameters of that problem in accordance with the loaded ExperimentalData for this SearchTask (if not null).Later, if any changes to the properties of that Problem occur and if the source of that event is either the Metadata or the PropertyHolderTable, they will be accounted for by altering the parameters of the problem accordingly -- immediately after the former take place.
setProperties(ThermalProperties) - Method in class pulse.problem.statements.Problem
setPropertyHolder(PropertyHolder) - Method in class pulse.ui.components.PropertyHolderTable
setPulse(Pulse) - Method in class pulse.problem.statements.Problem: Sets the pulse of this Problem and assigns this Problem as its parent.
setPulseData(NumericPulseData) - Method in class pulse.input.Metadata
setPulseDescriptor(InstanceDescriptor<? extends PulseTemporalShape>) - Method in class pulse.problem.statements.Pulse
setPulseShape(PulseTemporalShape) - Method in class pulse.problem.statements.Pulse
setPulseWidth(double) - Method in class pulse.problem.laser.PulseTemporalShape
setPulseWidth(NumericProperty) - Method in class pulse.problem.statements.Pulse
setQLast(int, double) - Method in class pulse.problem.schemes.rte.dom.DiscreteQuantities
setQuadrature(CompositionProduct) - Method in class pulse.problem.schemes.rte.exact.NonscatteringRadiativeTransfer: Sets the quadrature and updates its spectral function to that specified by this object.
setQuadraturePoints(NumericProperty) - Method in class pulse.problem.schemes.rte.exact.ChandrasekharsQuadrature
setRadiativeTransferEquation(RadiativeTransferSolver) - Method in class pulse.problem.schemes.RadiativeTransferCoupling
setRange(Range) - Method in class pulse.input.ExperimentalData: Sets the range, assigning this to its parent, and forcing changes to the indexRange.
setRank(int) - Method in class pulse.math.Harmonic
setReflectance(NumericProperty) - Method in class pulse.problem.statements.model.Insulator
setRelativeTolerance(NumericProperty) - Method in class pulse.problem.schemes.rte.dom.AdaptiveIntegrator
setRelaxationParameter(NumericProperty) - Method in class pulse.problem.schemes.rte.dom.SuccessiveOverrelaxation
setRemoveEnabled(boolean) - Method in class pulse.ui.components.panels.TaskToolbar
setResetEnabled(boolean) - Method in class pulse.ui.components.panels.TaskToolbar
setResidualsShown(boolean) - Method in class pulse.ui.components.Chart
setResult(Result) - Method in class pulse.tasks.Calculation
setSampleDiameter(NumericProperty) - Method in class pulse.problem.statements.model.ExtendedThermalProperties
setSampleName(SampleName) - Method in class pulse.input.Metadata: Sets the sample name property.
setSampleThickness(NumericProperty) - Method in class pulse.problem.statements.model.ThermalProperties
setScatteringAlbedo(NumericProperty) - Method in class pulse.problem.statements.model.ThermoOpticalProperties
setScatteringAnisotropy(NumericProperty) - Method in class pulse.problem.statements.model.ThermoOpticalProperties
setScheme(DifferenceScheme, ExperimentalData) - Method in class pulse.tasks.Calculation: Adopts the scheme by this SearchTask and updates the time limit of scheme to match ExperimentalData.
setSelected(boolean) - Method in class pulse.ui.components.buttons.IconCheckBox
setSelectedDescriptor(String) - Method in class pulse.util.InstanceDescriptor
setSelectedItem(Object) - Method in class pulse.ui.components.models.TaskBoxModel
setSelectedOptimiserDescriptor(String) - Static method in class pulse.search.statistics.OptimiserStatistic
setSelectedProblem(Problem) - Method in class pulse.ui.components.ProblemTree
setSelectedTestDescriptor(String) - Static method in class pulse.search.statistics.NormalityTest
setSideLosses(NumericProperty) - Method in class pulse.problem.statements.model.ExtendedThermalProperties
setSigma(NumericProperty) - Method in class pulse.problem.laser.ExponentiallyModifiedGaussian: Sets the SKEW_SIGMA parameter
setSignalAt(int, double) - Method in class pulse.AbstractData: Sets the signal t at the position index of the signal List.
setSingleStatement(boolean) - Method in class pulse.tasks.TaskManager: Sets the flag to isolate or inter-connects changes in all instances of PropertyHolder
setSize(NumericProperty) - Static method in class pulse.tasks.processing.Buffer: Sets a new size for this Buffer.
setSlope(NumericProperty) - Method in class pulse.baseline.AdjustableBaseline: Checks whether slope is a baseline slope property and updates the respective value of this baseline.
setSolidExchangeCoefficient(NumericProperty) - Method in class pulse.problem.statements.model.TwoTemperatureProperties
setSolutionAt(int, double) - Method in class pulse.problem.schemes.OneDimensionalScheme
setSolver(DirectionSolver) - Method in class pulse.search.direction.PathOptimiser
setSource(Object) - Method in class pulse.tasks.listeners.TaskSelectionEvent
setSource(Object) - Method in class pulse.ui.components.listeners.ProblemSelectionEvent
setSpecificHeat(NumericProperty) - Method in class pulse.problem.statements.model.ThermalProperties
setSpecificHeatDataset(InterpolationDataset) - Method in class pulse.tasks.TaskManager
setSpotDiameter(NumericProperty) - Method in class pulse.problem.statements.Pulse2D
setState(MovableValueMarker.State) - Method in class pulse.ui.components.MovableValueMarker
setStatistic(NumericProperty) - Method in class pulse.search.statistics.ModelSelectionCriterion
setStatistic(NumericProperty) - Method in class pulse.search.statistics.NormalityTest
setStatistic(NumericProperty) - Method in class pulse.search.statistics.ResidualStatistic
setStatisticalSignificance(NumericProperty) - Static method in class pulse.search.statistics.NormalityTest
setStatus(Status) - Method in class pulse.tasks.Calculation: Attempts to set the status of this calculation to status.
setStatus(Status) - Method in class pulse.tasks.logs.StateEntry
setStatus(Status) - Method in class pulse.tasks.SearchTask: Will return true if status could be updated.
setStoredDerivative(int, int, double) - Method in class pulse.problem.schemes.rte.dom.DiscreteQuantities
setStretchingFactor(NumericProperty) - Method in class pulse.problem.schemes.rte.dom.StretchedGrid
setSumOfSquares(SumOfSquares) - Method in class pulse.search.statistics.RSquaredTest
setTestTemperature(NumericProperty) - Method in class pulse.problem.statements.model.ThermalProperties
setThermalAbsorptivity(NumericProperty) - Method in class pulse.problem.statements.model.AbsorptionModel
setThreshold(NumericProperty) - Static method in class pulse.search.statistics.CorrelationTest
setTimeAt(int, double) - Method in class pulse.AbstractData: Sets the time t at the position index of the time List.
setTimeFactor(NumericProperty) - Method in class pulse.problem.schemes.Grid: Sets the value of the tauFactor.
setTimeFactor(NumericProperty) - Method in class pulse.problem.schemes.Grid2D
setTimeInterval(int) - Method in class pulse.problem.schemes.DifferenceScheme: Sets the time interval to the argument of this method.
setTimeLimit(NumericProperty) - Method in class pulse.problem.schemes.DifferenceScheme: Sets the time limit (in units defined by the corresponding NumericProperty), which serves as the breakpoint for the calculations.
setTimeShift(NumericProperty) - Method in class pulse.HeatingCurve: Sets the time shift and triggers TIME_ORIGIN_CHANGED in CurveEvent.
setTimeStep(double) - Method in class pulse.problem.schemes.Grid
setTimeThreshold(NumericProperty) - Method in class pulse.problem.schemes.rte.dom.AdaptiveIntegrator
SettingsToolBar - Class in pulse.ui.components.panels
SettingsToolBar(PropertyHolderTable...) - Constructor for class pulse.ui.components.panels.SettingsToolBar
setTransform(Transformable) - Method in class pulse.math.Parameter
setTrapezoidalFall(NumericProperty) - Method in class pulse.problem.laser.TrapezoidalPulse
setTrapezoidalRise(NumericProperty) - Method in class pulse.problem.laser.TrapezoidalPulse
setTridiagonalMatrixAlgorithm(TridiagonalMatrixAlgorithm) - Method in class pulse.problem.schemes.ImplicitScheme
setUndoEnabled(boolean) - Method in class pulse.ui.components.panels.ResultToolbar
setUpperBound(List<Double>, double) - Method in class pulse.input.IndexRange: Sets the end index by conducting a primitive binary search using closest(...) to find an element in data either matching or being as close as possible to b.
setUpperBound(NumericProperty) - Method in class pulse.input.Range: Sets the upper bound and triggers firePropertyChanged.
setValue(boolean) - Method in class pulse.properties.Flag
setValue(double) - Method in class pulse.math.Parameter
setValue(double, boolean) - Method in class pulse.math.Parameter
setValue(Number) - Method in class pulse.properties.NumericProperty: Sets the value of this NumericProperty -- if and only if the new value is confined within the definition domain for this NumericProperty.
setValues(Vector) - Method in class pulse.math.ParameterVector
setVisible(boolean) - Method in class pulse.ui.frames.dialogs.ResultChangeDialog
setVisibleByDefault(boolean) - Method in class pulse.properties.NumericProperty
setWeight(NumericProperty) - Method in class pulse.problem.schemes.solvers.MixedCoupledSolver
setXStep(double) - Method in class pulse.problem.schemes.Grid: Sets the value of the h_x coordinate step.
setZeroApproximationShown(boolean) - Method in class pulse.ui.components.Chart
SHELL_GRID_DENSITY - pulse.properties.NumericPropertyKeyword: Not implemented yet.
SHUTDOWN - pulse.tasks.listeners.TaskRepositoryEvent.State: The repository has been shut down/
signal - Variable in class pulse.AbstractData
signal() - Method in class pulse.problem.schemes.DifferenceScheme
signal() - Method in class pulse.problem.schemes.OneDimensionalScheme
signal() - Method in class pulse.problem.schemes.solvers.ADILinearisedSolver
signal() - Method in class pulse.problem.schemes.solvers.ExplicitTranslucentSolver
signal() - Method in class pulse.problem.schemes.solvers.ImplicitTranslucentSolver
signal() - Method in class pulse.problem.schemes.solvers.ImplicitTwoTemperatureSolver
signalAt(int) - Method in class pulse.AbstractData: Retrieves the signal value corresponding to the index index.
signalAt(int) - Method in class pulse.HeatingCurve: Retrieves the baseline-corrected temperature corresponding to index in the respective List.
significance - Static variable in class pulse.search.statistics.NormalityTest
SIGNIFICANCE - pulse.properties.NumericPropertyKeyword: Statistical significance for calculating the critical value.
SIGNIFICANT_CORRELATION_BETWEEN_PARAMETERS - pulse.tasks.logs.Details
SIGNIFICANT_FIGURES - Static variable in class pulse.tasks.processing.AverageResult
simpleInstances(String) - Static method in class pulse.util.ReflexiveFinder
simpleInstances(String, Object...) - Static method in class pulse.util.ReflexiveFinder: Finds simple instances of Reflexive subclasses within pckgname.
SimpleOptimisationTask<T extends PropertyHolder & Optimisable> - Class in pulse.search: Generic optimisation class.
SimpleOptimisationTask(T, DiscreteInput) - Constructor for class pulse.search.SimpleOptimisationTask
SimpleResponse - Class in pulse.search
SimpleResponse(OptimiserStatistic) - Constructor for class pulse.search.SimpleResponse
SimpsonIntegrator - Class in pulse.math: Implements the Simpson's integration rule for the evaluation of definite integrals.
SimpsonIntegrator(Segment) - Constructor for class pulse.math.SimpsonIntegrator
SimpsonIntegrator(Segment, NumericProperty) - Constructor for class pulse.math.SimpsonIntegrator
SinusoidalBaseline - Class in pulse.baseline: A multiple-harmonic baseline.
SinusoidalBaseline() - Constructor for class pulse.baseline.SinusoidalBaseline: Creates a sinusoidal baseline with default properties.
size() - Method in class pulse.tasks.processing.ResultFormat: Calculates the length of the format string, which is the same as the size of the keyword list.
SKEW_LAMBDA - pulse.properties.NumericPropertyKeyword: λ parameter for skewed normal distribution.
SKEW_MU - pulse.properties.NumericPropertyKeyword: μ parameter for skewed normal distribution.
SKEW_SIGMA - pulse.properties.NumericPropertyKeyword: σ parameter for skewed normal distribution.
SOLID_EXCHANGE_COEFFICIENT - pulse.properties.NumericPropertyKeyword: Energy exchange coefficient in the two-temperature model (g).
solve(ClassicalProblem) - Method in class pulse.problem.schemes.solvers.ExplicitLinearisedSolver
solve(ClassicalProblem) - Method in class pulse.problem.schemes.solvers.ImplicitLinearisedSolver
solve(ClassicalProblem) - Method in class pulse.problem.schemes.solvers.MixedLinearisedSolver
solve(ClassicalProblem2D) - Method in class pulse.problem.schemes.solvers.ADILinearisedSolver
solve(DiathermicMedium) - Method in class pulse.problem.schemes.solvers.ImplicitDiathermicSolver
solve(NonlinearProblem) - Method in class pulse.problem.schemes.solvers.ExplicitNonlinearSolver
solve(NonlinearProblem) - Method in class pulse.problem.schemes.solvers.ImplicitNonlinearSolver
solve(ParticipatingMedium) - Method in class pulse.problem.schemes.solvers.ExplicitCoupledSolver
solve(ParticipatingMedium) - Method in class pulse.problem.schemes.solvers.ImplicitCoupledSolver
solve(ParticipatingMedium) - Method in class pulse.problem.schemes.solvers.MixedCoupledSolver
solve(PenetrationProblem) - Method in class pulse.problem.schemes.solvers.ExplicitTranslucentSolver
solve(PenetrationProblem) - Method in class pulse.problem.schemes.solvers.ImplicitTranslucentSolver
solve(TwoTemperatureModel) - Method in class pulse.problem.schemes.solvers.ImplicitTwoTemperatureSolver
solve(ComplexPath, Vector) - Static method in interface pulse.search.direction.HessianDirectionSolver
solve(T) - Method in interface pulse.problem.schemes.solvers.Solver: Calculates the solution of the t and stores it in the respective HeatingCurve.
Solver<T extends Problem> - Interface in pulse.problem.schemes.solvers: A solver interface which provides the capability to use the solve method on a Problem.
SOLVER_ERROR - pulse.tasks.logs.Details
SolverException - Exception in pulse.problem.schemes.solvers
SolverException(String, SolverException.SolverExceptionType) - Constructor for exception pulse.problem.schemes.solvers.SolverException
SolverException(SolverException.SolverExceptionType) - Constructor for exception pulse.problem.schemes.solvers.SolverException
SolverException.SolverExceptionType - Enum in pulse.problem.schemes.solvers
sort(List<ExperimentalData>) - Static method in interface pulse.io.readers.CurveReader: Sorts the List of ExperimentalData according to their external IDs (if any).
source(int, double[], double[], double, int, int) - Method in class pulse.problem.schemes.rte.dom.ODEIntegrator
source(int, int, double, double) - Method in class pulse.problem.schemes.rte.dom.ODEIntegrator
SOURCE_GEOMETRIC_FACTOR - pulse.properties.NumericPropertyKeyword: Determines how much weight is attributed to the front-face light source compared to rear face.
SpearmansCorrelationTest - Class in pulse.search.statistics: Wrapper CorrelationTest class for ApacheCommonsMath Spearmans Correlation.
SpearmansCorrelationTest() - Constructor for class pulse.search.statistics.SpearmansCorrelationTest
SPECIFIC_HEAT - pulse.properties.NumericPropertyKeyword: Specific heat (C_p).
specificAncestor(Class<? extends UpwardsNavigable>) - Method in class pulse.util.UpwardsNavigable: Finds an ancestor that looks similar to aClass by recursively calling getParent().
SpectralRange - Enum in pulse.problem.statements.model
SPOT_DIAMETER - pulse.properties.NumericPropertyKeyword: Laser spot diameter.
SQRT - Static variable in class pulse.math.transforms.StandardTransformations
SQUARE - Static variable in class pulse.search.direction.pso.StaticTopologies: Von Neumann topology (square lattice) Condition: if( ( ps.length & (ps.length - 1) ) != 0) throw new IllegalArgumentException("Number of particles: " + ps.length + " is not power of 2");
SquareMatrix - Class in pulse.math.linear: The matrix class.
SquareMatrix(double[][]) - Constructor for class pulse.math.linear.SquareMatrix: Constructs a Matrix with the elements copied from args.
SR1Optimiser - Class in pulse.search.direction
StandardTransformations - Class in pulse.math.transforms: A utility class containing standard mathematical transforms and their inverses for non-bounded parameters.
StateEntry - Class in pulse.tasks.logs
StateEntry(SearchTask, Status) - Constructor for class pulse.tasks.logs.StateEntry
StaticTopologies - Class in pulse.search.direction.pso
Statistic - Class in pulse.search.statistics: A statistic is an abstract class that hosts the evaluate method to validate the results of a SearchTask.
Statistic() - Constructor for class pulse.search.statistics.Statistic
Status - Enum in pulse.tasks.logs: An enum that represents the different states in which a SearchTask can be.
STATUS_COLUMN - Static variable in class pulse.ui.components.models.StoredCalculationTableModel
STATUS_COLUMN - Static variable in class pulse.ui.components.models.TaskTableModel
StatusChangeListener - Interface in pulse.tasks.listeners
SteepestDescentOptimiser - Class in pulse.search.direction: The simplest possible PathSolver, which assumes that the minimum direction coincides with the inverted gradient.
STEFAN_BOTLZMAN - Static variable in class pulse.problem.statements.model.ThermalProperties
step(int, double) - Method in class pulse.problem.schemes.rte.dom.AdaptiveIntegrator
step(int, double) - Method in class pulse.problem.schemes.rte.dom.ExplicitRungeKutta
step(int, double) - Method in class pulse.problem.schemes.rte.dom.StretchedGrid
step(int, double) - Method in class pulse.problem.schemes.rte.dom.TRBDF2: Performs a TRBDF2 step.
stepLeft(int) - Method in class pulse.problem.schemes.rte.dom.StretchedGrid
stepRight(int) - Method in class pulse.problem.schemes.rte.dom.StretchedGrid
stepSize() - Method in class pulse.math.FixedIntervalIntegrator: Retrieves the step size equal to the integration range length divided by the number of integration segments.
StickTransform - Class in pulse.math.transforms: A simple bounded transform which makes the parameter stick to the boundaries upon reaching them.
StickTransform(Segment) - Constructor for class pulse.math.transforms.StickTransform: Only the upper bound of the argument is used.
STOP - pulse.ui.components.buttons.ExecutionButton.ExecutionState
stopCellEditing() - Method in class pulse.ui.components.controllers.NumberEditor
store() - Method in class pulse.problem.schemes.rte.dom.DiscreteQuantities
store() - Method in class pulse.problem.schemes.rte.Fluxes: Stores all currently calculated fluxes in a separate array.
store() - Method in class pulse.problem.schemes.rte.FluxesAndExplicitDerivatives
storeCalculation() - Method in class pulse.tasks.SearchTask
StoredCalculationTableModel - Class in pulse.ui.components.models
StoredCalculationTableModel() - Constructor for class pulse.ui.components.models.StoredCalculationTableModel
storeState() - Static method in class pulse.search.direction.ActiveFlags: Creates a deep copy of the flags collection.
storeState() - Method in class pulse.search.GeneralTask: Update the best state.
StretchedGrid - Class in pulse.problem.schemes.rte.dom
StretchedGrid(double) - Constructor for class pulse.problem.schemes.rte.dom.StretchedGrid: Constructs a uniform grid where the dimension is set to the argument.
StretchedGrid(NumericProperty, double) - Constructor for class pulse.problem.schemes.rte.dom.StretchedGrid: Constructs a non-uniform grid where the dimension and the grid density are specified by the arguments.
StretchedGrid(NumericProperty, double, NumericProperty, boolean) - Constructor for class pulse.problem.schemes.rte.dom.StretchedGrid
stringToValue(String) - Method in class pulse.properties.NumericPropertyFormatter
subgroups() - Method in class pulse.baseline.SinusoidalBaseline
subgroups() - Method in class pulse.util.Group: Tries to access getter methods to retrieve all Accessible instances belonging to this object.
subtract(RectangularMatrix) - Method in class pulse.math.linear.RectangularMatrix: Performs an element-wise subtraction of m from this if these matrices have matching dimensions.
subtract(Vector) - Method in class pulse.math.linear.Vector: Performs an element-wise subtraction of v from this.
SuccessiveOverrelaxation - Class in pulse.problem.schemes.rte.dom
SuccessiveOverrelaxation() - Constructor for class pulse.problem.schemes.rte.dom.SuccessiveOverrelaxation
sum(RectangularMatrix) - Method in class pulse.math.linear.RectangularMatrix: Performs an element-wise summation if this and m have matching dimensions.
sum(Vector) - Method in class pulse.math.linear.Vector: Performs an element-wise summation of this and v.
sumExcludingIndex(int, int, int) - Method in class pulse.problem.schemes.rte.dom.PhaseFunction
SumOfSquares - Class in pulse.search.statistics: The standard optimality criterion of the L2 norm condition, or simply ordinary least squares.
SumOfSquares() - Constructor for class pulse.search.statistics.SumOfSquares
SumOfSquares(SumOfSquares) - Constructor for class pulse.search.statistics.SumOfSquares
SwarmState - Class in pulse.search.direction.pso
SwarmState() - Constructor for class pulse.search.direction.pso.SwarmState
SwarmState(int, NeighbourhoodTopology) - Constructor for class pulse.search.direction.pso.SwarmState
sweep(double[]) - Method in class pulse.problem.schemes.BlockMatrixAlgorithm
sweep(double[]) - Method in class pulse.problem.schemes.TridiagonalMatrixAlgorithm: Calculates the solution V using the tridiagonal matrix algorithm.
switchTo(Calculation) - Method in class pulse.tasks.SearchTask
switchToBestModel() - Method in class pulse.tasks.SearchTask
SystemPanel - Class in pulse.ui.components.panels
SystemPanel() - Constructor for class pulse.ui.components.panels.SystemPanel

T

tanh(double, double) - Method in class pulse.problem.schemes.rte.dom.StretchedGrid
target() - Method in class pulse.io.export.CurveExporter
target() - Method in interface pulse.io.export.Exporter: Defines the class, instances of which can be fed into the exporter to produce a result.
target() - Method in class pulse.io.export.LogExporter
target() - Method in class pulse.io.export.MetadataExporter
target() - Method in class pulse.io.export.RawDataExporter
target() - Method in class pulse.io.export.ResidualStatisticExporter
target() - Method in class pulse.io.export.ResultExporter
target() - Method in class pulse.io.export.ResultTableExporter
target() - Method in class pulse.io.export.TextLogPaneExporter
TASK - pulse.ui.frames.TaskControlFrame.Mode
TASK_ADDED - pulse.tasks.listeners.TaskRepositoryEvent.State: Indicates a task has been added to the repository.
TASK_BROWSING_REQUEST - pulse.tasks.listeners.TaskRepositoryEvent.State: An external request has been received to browse previous calculations.
TASK_CRITERION_SWITCH - pulse.tasks.listeners.TaskRepositoryEvent.State: The task changed its selection criterion.
TASK_FINISHED - pulse.tasks.listeners.TaskRepositoryEvent.State: A task has finished executing.
TASK_MODEL_SWITCH - pulse.tasks.listeners.TaskRepositoryEvent.State: The task has switched to a new model.
TASK_REMOVED - pulse.tasks.listeners.TaskRepositoryEvent.State: A task has been removed from the repository.
TASK_RESET - pulse.tasks.listeners.TaskRepositoryEvent.State: A task has been reset.
TASK_SUBMITTED - pulse.tasks.listeners.TaskRepositoryEvent.State: A task has been submitted for execution.
TaskActionListener - Interface in pulse.ui.components.listeners
TaskBox - Class in pulse.ui.components
TaskBox() - Constructor for class pulse.ui.components.TaskBox
TaskBoxModel - Class in pulse.ui.components.models
TaskBoxModel() - Constructor for class pulse.ui.components.models.TaskBoxModel
TaskControlFrame - Class in pulse.ui.frames
TaskControlFrame.Mode - Enum in pulse.ui.frames
TaskManager - Class in pulse.tasks: The TaskManager is a high-level class for dealing with operations of creation, removal, storage, and execution of SearchTasks, as well as with the associated Results and InterpolationDatasets.
TaskManagerFrame - Class in pulse.ui.frames
TaskManagerFrame() - Constructor for class pulse.ui.frames.TaskManagerFrame
TaskPopupMenu - Class in pulse.ui.components
TaskPopupMenu() - Constructor for class pulse.ui.components.TaskPopupMenu
TaskRepositoryEvent - Class in pulse.tasks.listeners
TaskRepositoryEvent(TaskRepositoryEvent.State, Identifier) - Constructor for class pulse.tasks.listeners.TaskRepositoryEvent
TaskRepositoryEvent.State - Enum in pulse.tasks.listeners
TaskRepositoryListener - Interface in pulse.tasks.listeners
TaskSelectionEvent - Class in pulse.tasks.listeners
TaskSelectionEvent(Object) - Constructor for class pulse.tasks.listeners.TaskSelectionEvent
TaskSelectionListener - Interface in pulse.tasks.listeners
TaskTable - Class in pulse.ui.components
TaskTable() - Constructor for class pulse.ui.components.TaskTable
TaskTableModel - Class in pulse.ui.components.models
TaskTableModel() - Constructor for class pulse.ui.components.models.TaskTableModel
TaskTableRenderer - Class in pulse.ui.components.controllers
TaskTableRenderer() - Constructor for class pulse.ui.components.controllers.TaskTableRenderer
TaskToolbar - Class in pulse.ui.components.panels
TaskToolbar() - Constructor for class pulse.ui.components.panels.TaskToolbar
tau - Variable in class pulse.problem.schemes.solvers.ImplicitLinearisedSolver
TAU_FACTOR - pulse.properties.NumericPropertyKeyword: The factor used to convert squared grid spacing to time step.
TBLReader - Class in pulse.io.readers: A DatasetReader capable of reading .tbl files.
tellParent(PropertyEvent) - Method in class pulse.util.UpwardsNavigable: Recursively informs the parent, the parent of its parent, etc.
terminate() - Method in class pulse.tasks.SearchTask: If the current task is either IN_PROGRESS, QUEUED, or READY, terminates it by setting its status to TERMINATED.
TERMINATED - pulse.tasks.logs.Status: Task terminated
test(GeneralTask) - Method in class pulse.search.statistics.AndersonDarlingTest: This uses the SSJ statistical library to calculate the Anderson-Darling test with the input parameters formed by the task residuals and a normal distribution with zero mean and variance equal to the residuals variance.
test(GeneralTask) - Method in class pulse.search.statistics.EmptyTest: Always returns true
test(GeneralTask) - Method in class pulse.search.statistics.KSTest
test(GeneralTask) - Method in class pulse.search.statistics.NormalityTest
test(GeneralTask) - Method in class pulse.search.statistics.RSquaredTest
test(CorrelationTest) - Method in class pulse.tasks.processing.CorrelationBuffer
test(Calculation, Calculation) - Static method in class pulse.search.statistics.FTest: Tests two models to see which one is better according to the F-test
TEST_STATISTIC - pulse.properties.NumericPropertyKeyword: Test statistic (e.g.
TEST_STATISTIC_COLUMN - Static variable in class pulse.ui.components.models.TaskTableModel
TEST_TEMPERATURE - pulse.properties.NumericPropertyKeyword: Test temperature, at which the laser was fired at the sample.
TextLogPane - Class in pulse.ui.components
TextLogPane() - Constructor for class pulse.ui.components.TextLogPane
TextLogPaneExporter - Class in pulse.io.export: Similar to a LogExporter, except that it works only on the contents of a LogPane currently being displayed to the user.
THERMAL - pulse.problem.statements.model.SpectralRange
THERMAL_ABSORPTIVITY - pulse.properties.NumericPropertyKeyword: Dimensionless coefficient of thermal radiation absorption.
thermalConductivity() - Method in class pulse.problem.statements.model.ThermalProperties
thermalConductivity(double) - Method in class pulse.problem.statements.model.Gas
thermalConductivity(double) - Method in class pulse.problem.statements.model.Helium
thermalConductivity(double) - Method in class pulse.problem.statements.model.Nitrogen
thermalDiffusivity() - Method in class pulse.problem.statements.model.Gas
ThermalProperties - Class in pulse.problem.statements.model
ThermalProperties() - Constructor for class pulse.problem.statements.model.ThermalProperties
ThermalProperties(ThermalProperties) - Constructor for class pulse.problem.statements.model.ThermalProperties
ThermoOpticalProperties - Class in pulse.problem.statements.model
ThermoOpticalProperties() - Constructor for class pulse.problem.statements.model.ThermoOpticalProperties
ThermoOpticalProperties(ThermalProperties) - Constructor for class pulse.problem.statements.model.ThermoOpticalProperties
ThermoOpticalProperties(ThermoOpticalProperties) - Constructor for class pulse.problem.statements.model.ThermoOpticalProperties
THICKNESS - pulse.properties.NumericPropertyKeyword: Sample thickness.
threadsAvailable() - Method in class pulse.util.ResourceMonitor: Finds the number of threads available for calculation.
time - Variable in class pulse.AbstractData
TIME_LIMIT - pulse.properties.NumericPropertyKeyword: Calculation time limit.
TIME_ORIGIN_CHANGED - pulse.input.listeners.CurveEventType: Indicates a new time shift is introduced between the time sequences of a HeatingCurve and its linked ExperimentalData.
TIME_SHIFT - pulse.properties.NumericPropertyKeyword: Time shift (pulse sync).
timeAt(int) - Method in class pulse.AbstractData: Retrieves an element from the time List specified by index
timeAt(int) - Method in class pulse.HeatingCurve: Retrieves the time from the stored list of values, adding the value of startTime to the result.
timeLimit() - Method in class pulse.AbstractData: Retrieves the last element of the time List.
timeLimit() - Method in class pulse.input.ExperimentalData: Retrieves the time limit.
TIMEOUT - pulse.tasks.logs.Status: The iteration limit has been reached and the task aborted.
timeStep(int) - Method in class pulse.problem.schemes.DifferenceScheme
timeStep(int) - Method in class pulse.problem.schemes.ImplicitScheme: Calculates the solution at the boundaries using the boundary conditions specific to the problem statement and runs the tridiagonal matrix algorithm to evaluate solution at the intermediate grid points.
timeStep(int) - Method in class pulse.problem.schemes.solvers.ADILinearisedSolver
timeStep(int) - Method in class pulse.problem.schemes.solvers.ExplicitCoupledSolver
timeStep(int) - Method in class pulse.problem.schemes.solvers.ExplicitCoupledSolverNL
timeStep(int) - Method in class pulse.problem.schemes.solvers.ExplicitLinearisedSolver
timeStep(int) - Method in class pulse.problem.schemes.solvers.ExplicitNonlinearSolver
timeStep(int) - Method in class pulse.problem.schemes.solvers.ExplicitTranslucentSolver
timeStep(int) - Method in class pulse.problem.schemes.solvers.ImplicitCoupledSolverNL
timeStep(int) - Method in class pulse.problem.schemes.solvers.ImplicitNonlinearSolver
timeStep(int) - Method in class pulse.problem.schemes.solvers.ImplicitTwoTemperatureSolver
timeStep(int) - Method in class pulse.problem.schemes.solvers.MixedCoupledSolverNL
timeTaken() - Method in class pulse.tasks.logs.Log: Time taken where the first array element contains seconds [0] and the second contains milliseconds [1].
TO_SECONDS - Static variable in class pulse.io.readers.NetzschCSVReader
toString() - Method in class pulse.AbstractData
toString() - Method in class pulse.baseline.FlatBaseline
toString() - Method in class pulse.baseline.LinearBaseline
toString() - Method in class pulse.baseline.SinusoidalBaseline
toString() - Method in class pulse.input.ExperimentalData
toString() - Method in class pulse.input.IndexRange
toString() - Method in class pulse.input.Metadata
toString() - Method in class pulse.input.Range
toString() - Method in enum pulse.io.export.Extension: This will return the lower-case string with the name of the extension (e.g., html or csv).
toString() - Method in class pulse.math.FixedIntervalIntegrator
toString() - Method in class pulse.math.Harmonic
toString() - Method in class pulse.math.linear.RectangularMatrix: Prints out matrix dimensions and all the elements contained in it.
toString() - Method in class pulse.math.linear.Vector: Defines the string representation of the current instance of the class.
toString() - Method in class pulse.math.ParameterIdentifier
toString() - Method in class pulse.math.ParameterVector
toString() - Method in class pulse.math.Segment
toString() - Method in class pulse.problem.laser.PulseTemporalShape
toString() - Method in class pulse.problem.schemes.ADIScheme: Prints out the description of this problem type.
toString() - Method in class pulse.problem.schemes.DifferenceScheme
toString() - Method in class pulse.problem.schemes.ExplicitScheme: Prints out the description of this problem type.
toString() - Method in class pulse.problem.schemes.Grid
toString() - Method in class pulse.problem.schemes.ImplicitScheme: Prints out the description of this problem type.
toString() - Method in class pulse.problem.schemes.MixedScheme: Prints out the description of this problem type.
toString() - Method in class pulse.problem.schemes.RadiativeTransferCoupling
toString() - Method in class pulse.problem.schemes.rte.BlackbodySpectrum
toString() - Method in class pulse.problem.schemes.rte.dom.AdaptiveIntegrator
toString() - Method in class pulse.problem.schemes.rte.dom.ButcherTableau
toString() - Method in class pulse.problem.schemes.rte.dom.DiscreteOrdinatesMethod
toString() - Method in class pulse.problem.schemes.rte.dom.Discretisation
toString() - Method in class pulse.problem.schemes.rte.dom.ExplicitRungeKutta
toString() - Method in class pulse.problem.schemes.rte.dom.HermiteInterpolator
toString() - Method in class pulse.problem.schemes.rte.dom.IterativeSolver
toString() - Method in class pulse.problem.schemes.rte.dom.ODEIntegrator
toString() - Method in class pulse.problem.schemes.rte.dom.OrdinateSet
toString() - Method in class pulse.problem.schemes.rte.dom.PhaseFunction
toString() - Method in class pulse.problem.schemes.rte.dom.StretchedGrid
toString() - Method in class pulse.problem.schemes.rte.dom.SuccessiveOverrelaxation
toString() - Method in class pulse.problem.schemes.rte.exact.ChandrasekharsQuadrature
toString() - Method in class pulse.problem.schemes.rte.exact.NewtonCotesQuadrature
toString() - Method in class pulse.problem.schemes.rte.exact.NonscatteringRadiativeTransfer
toString() - Method in class pulse.problem.schemes.solvers.ExplicitCoupledSolver: Prints out the description of this problem type.
toString() - Method in class pulse.problem.schemes.solvers.ExplicitCoupledSolverNL
toString() - Method in class pulse.problem.schemes.solvers.ExplicitTranslucentSolver: Prints out the description of this problem type.
toString() - Method in class pulse.problem.schemes.solvers.ImplicitCoupledSolver
toString() - Method in class pulse.problem.schemes.solvers.ImplicitCoupledSolverNL
toString() - Method in class pulse.problem.schemes.solvers.ImplicitTranslucentSolver: Prints out the description of this problem type.
toString() - Method in class pulse.problem.schemes.solvers.ImplicitTwoTemperatureSolver: Prints out the description of this problem type.
toString() - Method in class pulse.problem.schemes.solvers.MixedCoupledSolverNL
toString() - Method in class pulse.problem.statements.ClassicalProblem
toString() - Method in class pulse.problem.statements.ClassicalProblem2D
toString() - Method in class pulse.problem.statements.DiathermicMedium
toString() - Method in class pulse.problem.statements.model.AbsorptionModel
toString() - Method in class pulse.problem.statements.model.Gas
toString() - Method in enum pulse.problem.statements.model.SpectralRange
toString() - Method in class pulse.problem.statements.model.ThermalProperties
toString() - Method in class pulse.problem.statements.model.ThermoOpticalProperties
toString() - Method in class pulse.problem.statements.NonlinearProblem
toString() - Method in class pulse.problem.statements.ParticipatingMedium
toString() - Method in class pulse.problem.statements.PenetrationProblem
toString() - Method in class pulse.problem.statements.Problem
toString() - Method in class pulse.problem.statements.Pulse
toString() - Method in class pulse.problem.statements.Pulse2D
toString() - Method in class pulse.problem.statements.TwoTemperatureModel
toString() - Method in class pulse.properties.Flag
toString() - Method in class pulse.properties.NumericProperty: Prints out the type and value of this NumericProperty.
toString() - Method in class pulse.properties.SampleName
toString() - Method in class pulse.search.direction.BFGSOptimiser
toString() - Method in class pulse.search.direction.LMOptimiser
toString() - Method in class pulse.search.direction.PathOptimiser
toString() - Method in class pulse.search.direction.SR1Optimiser
toString() - Method in class pulse.search.direction.SteepestDescentOptimiser
toString() - Method in class pulse.search.linear.GoldenSectionOptimiser
toString() - Method in class pulse.search.linear.LinearOptimiser
toString() - Method in class pulse.search.linear.WolfeOptimiser
toString() - Method in class pulse.tasks.Identifier
toString() - Method in class pulse.tasks.logs.CorrelationLogEntry
toString() - Method in class pulse.tasks.logs.DataLogEntry: This String will be displayed by the LogPane if the verbose log option is enabled.
toString() - Method in enum pulse.tasks.logs.Details
toString() - Method in class pulse.tasks.logs.Log: Outputs all log entries consecutively.
toString() - Method in class pulse.tasks.logs.StateEntry
toString() - Method in enum pulse.tasks.logs.Status
toString() - Method in class pulse.tasks.processing.AbstractResult: This will print out all the properties according to the ResultFormat.
toString() - Method in class pulse.tasks.SearchTask
toString() - Method in class pulse.ui.Version
toString() - Method in class pulse.util.DiscreteSelector
toString() - Method in class pulse.util.ImmutableDataEntry
toString() - Method in class pulse.util.InstanceDescriptor
toString() - Method in class pulse.util.PropertyEvent
totalEnergy() - Method in class pulse.problem.laser.DiscretePulse: Calculates the total pulse energy using a numerical integrator.The normalisation factor is then equal to the inverse total energy.
toVector() - Method in class pulse.math.ParameterVector
trackProgress(int) - Method in class pulse.ui.frames.dialogs.ProgressDialog
transform() - Method in class pulse.math.FFTTransformer
transform(double) - Method in class pulse.math.transforms.AtanhTransform
transform(double) - Method in class pulse.math.transforms.InvDiamTransform
transform(double) - Method in class pulse.math.transforms.PeriodicTransform
transform(double) - Method in class pulse.math.transforms.StickTransform
transform(double) - Method in interface pulse.math.transforms.Transformable: Performs the selected transform with value
Transformable - Interface in pulse.math.transforms: An interface for performing reversible one-to-one mapping of the model parameters.
transpose() - Method in class pulse.math.linear.RectangularMatrix: Transposes this Matrix, i.e.
TRAPEZOIDAL_FALL_PERCENTAGE - pulse.properties.NumericPropertyKeyword: Percentage of final (fall) segment of the pulse trapezoid.
TRAPEZOIDAL_RISE_PERCENTAGE - pulse.properties.NumericPropertyKeyword: Percentage of initial (rise) segment of the pulse trapezoid.
TrapezoidalPulse - Class in pulse.problem.laser: A trapezoidal pulse shape, which combines a rise segment, a constant-power segment, and a fall segment.
TrapezoidalPulse() - Constructor for class pulse.problem.laser.TrapezoidalPulse: Constructs a trapezoidal pulse using a default segmentation principle.
TrapezoidalPulse(TrapezoidalPulse) - Constructor for class pulse.problem.laser.TrapezoidalPulse
TRBDF2 - Class in pulse.problem.schemes.rte.dom: TRBDF2 (Trapezoidal Backward Differencing Second Order) Scheme for the solution of one-dimensional radiative transfer problems.
TRBDF2(Discretisation) - Constructor for class pulse.problem.schemes.rte.dom.TRBDF2
treatZeroIndex() - Method in class pulse.problem.schemes.rte.dom.ODEIntegrator
TridiagonalMatrixAlgorithm - Class in pulse.problem.schemes: Implements the tridiagonal matrix algorithm (Thomas algorithms) for solving systems of linear equations.
TridiagonalMatrixAlgorithm(Grid) - Constructor for class pulse.problem.schemes.TridiagonalMatrixAlgorithm
troubleshoot(SolverException) - Static method in enum pulse.tasks.logs.Status
truncate() - Method in class pulse.input.ExperimentalData: Truncates the range and indexRange of this ExperimentalData above a certain threshold, NOT removing any data elements.
TUKEY - Static variable in interface pulse.math.Window
TwoTemperatureModel - Class in pulse.problem.statements
TwoTemperatureModel() - Constructor for class pulse.problem.statements.TwoTemperatureModel
TwoTemperatureModel(TwoTemperatureModel) - Constructor for class pulse.problem.statements.TwoTemperatureModel
TwoTemperatureProperties - Class in pulse.problem.statements.model
TwoTemperatureProperties() - Constructor for class pulse.problem.statements.model.TwoTemperatureProperties
TwoTemperatureProperties(ThermalProperties) - Constructor for class pulse.problem.statements.model.TwoTemperatureProperties
typeOfAbsorption() - Method in enum pulse.problem.statements.model.SpectralRange

U

UNBOUNDED - Static variable in class pulse.math.Segment
undo() - Method in class pulse.ui.components.ResultTable
UNLIMITED - Static variable in class pulse.input.Range
update() - Method in class pulse.tasks.logs.AbstractLogger
update() - Method in class pulse.ui.components.models.SelectedKeysModel
update() - Method in class pulse.ui.frames.ProblemStatementFrame
update() - Method in class pulse.ui.frames.SearchOptionsFrame
update() - Method in class pulse.util.ResourceMonitor
update(List<NumericPropertyKeyword>) - Method in class pulse.ui.components.models.SelectedKeysModel
update(OptimisablePolyline) - Method in class pulse.math.filters.PolylineOptimiser.PolylineResponse
update(NumericProperty) - Method in class pulse.util.Accessible: Set a NumericProperty contained in this Accessible or any of its accessible childern, using the NumericPropertyKeyword of the argument as identifier and its value.
update(Property) - Method in class pulse.search.direction.PathOptimiser: Finds a Flag equivalent to flag in the originalList and substitutes its value with flag.getValue.
update(Property) - Method in class pulse.util.Accessible: Runs recursive search for a property in this Accessible object with the same identifier as property and sets its value to the value of the property parameter.If property is a NumericProperty, uses its NumericPropertyKeyword for identification.
update(ResultFormat, double[][][]) - Method in class pulse.ui.frames.PreviewFrame
update(SearchTask) - Method in class pulse.ui.components.CalculationTable
update(SearchTask) - Method in class pulse.ui.components.models.StoredCalculationTableModel
updateMinimum(NumericProperty) - Method in class pulse.input.Range: Updates the lower bound of this range using the information contained in p.
updateProperties(Object, PropertyHolder) - Method in class pulse.util.PropertyHolder: This method will update this PropertyHolder with all properties that are contained in a different propertyHolder, if they also are present in the former.
updateProperty(Object, Property) - Method in class pulse.util.PropertyHolder: Attempts to update an updatedProperty similar to one found in this PropertyHolder.
updateTable() - Method in class pulse.ui.components.PropertyHolderTable
UPPER_BOUND - pulse.properties.NumericPropertyKeyword: Upper calculation bound for optimiser.
UPPER_LIMIT - Static variable in class pulse.properties.NumericPropertyFormatter: Start using scientific notations for number whose absolute values are larger than 10000.0.
UpwardsNavigable - Class in pulse.util: An UpwardsNavigable provides a two-way connection with the other Describable in an asymmetric (upwards-oriented) manner (hence its name).
UpwardsNavigable() - Constructor for class pulse.util.UpwardsNavigable
userSaysRevert() - Method in class pulse.ui.components.controllers.NumberEditor: Lets the user know that the text they entered is bad.
useTheoreticalEstimates(ExperimentalData) - Method in class pulse.problem.statements.model.ExtendedThermalProperties
useTheoreticalEstimates(ExperimentalData) - Method in class pulse.problem.statements.model.ThermalProperties: Calculates the half-rise time t_1/2 of c and uses it to estimate the thermal diffusivity of this problem: a=0.1388*l²/t_1/2.
useTheoreticalEstimates(ExperimentalData) - Method in class pulse.problem.statements.model.ThermoOpticalProperties

V

validate() - Method in class pulse.properties.NumericProperty
value() - Method in class pulse.ui.frames.dialogs.FormattedInputDialog
valueAt(double) - Method in class pulse.baseline.AdjustableBaseline: Calculates the linear function g(x) = intercept + slope*time
valueAt(double) - Method in class pulse.baseline.Baseline: Calculates the baseline at the given position.
valueAt(double) - Method in class pulse.baseline.SinusoidalBaseline
valueAt(double) - Method in class pulse.math.FunctionWithInterpolation: Uses the stored interpolation function to calculate values at any t within the parameter bounds.
valueAt(double) - Method in class pulse.math.Harmonic: Amplitude form of the Fourier harmonic
valueInCurrentUnits() - Method in class pulse.properties.NumericProperty
valueOf(String) - Static method in enum pulse.input.listeners.CurveEventType: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum pulse.input.listeners.DataEventType: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum pulse.io.export.Extension: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum pulse.problem.schemes.rte.RTECalculationStatus: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum pulse.problem.schemes.solvers.SolverException.SolverExceptionType: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum pulse.problem.statements.model.SpectralRange: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum pulse.problem.statements.ProblemComplexity: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum pulse.properties.NumericPropertyKeyword: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum pulse.tasks.listeners.TaskRepositoryEvent.State: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum pulse.tasks.logs.Details: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum pulse.tasks.logs.Status: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum pulse.ui.components.buttons.ExecutionButton.ExecutionState: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum pulse.ui.components.buttons.LoaderButton.DataType: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum pulse.ui.components.MovableValueMarker.State: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum pulse.ui.frames.TaskControlFrame.Mode: Returns the enum constant of this type with the specified name.
values() - Static method in enum pulse.input.listeners.CurveEventType: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum pulse.input.listeners.DataEventType: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum pulse.io.export.Extension: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum pulse.problem.schemes.rte.RTECalculationStatus: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum pulse.problem.schemes.solvers.SolverException.SolverExceptionType: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum pulse.problem.statements.model.SpectralRange: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum pulse.problem.statements.ProblemComplexity: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum pulse.properties.NumericPropertyKeyword: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum pulse.tasks.listeners.TaskRepositoryEvent.State: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum pulse.tasks.logs.Details: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum pulse.tasks.logs.Status: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum pulse.ui.components.buttons.ExecutionButton.ExecutionState: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum pulse.ui.components.buttons.LoaderButton.DataType: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum pulse.ui.components.MovableValueMarker.State: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum pulse.ui.frames.TaskControlFrame.Mode: Returns an array containing the constants of this enum type, in the order they are declared.
valueToString(Object) - Method in class pulse.properties.NumericPropertyFormatter: Used to print out a nice value for GUI applications and for exporting.
variance() - Method in class pulse.search.statistics.AbsoluteDeviations
variance() - Method in class pulse.search.statistics.OptimiserStatistic
variance() - Method in class pulse.search.statistics.SumOfSquares
variance(NumericPropertyKeyword) - Method in class pulse.tasks.processing.Buffer: Calculates the variance for the index -- if the respective NumericProperty is contained in the IndexedVector data of this Buffer.
Vector - Class in pulse.math.linear: This is a general class for Vector operations useful for optimisers and ODE solvers.
Vector(double[]) - Constructor for class pulse.math.linear.Vector: Constructs a new vector specified by the argument array
Vector(int) - Constructor for class pulse.math.linear.Vector: Creates a zero Vector.
Vector(Vector) - Constructor for class pulse.math.linear.Vector: Copy constructor.
Version - Class in pulse.ui
Version(String, long) - Constructor for class pulse.ui.Version

W

wasRescaled() - Method in class pulse.problem.schemes.rte.dom.AdaptiveIntegrator
weight(List<ModelSelectionCriterion>) - Method in class pulse.search.statistics.ModelSelectionCriterion: Calculates the weight (in the Akaike sense) when comparing the model associated with this statistic with other models represented by statistics of the same type.
weight(List<Calculation>) - Method in class pulse.tasks.Calculation
WEIGHT_COLUMN - Static variable in class pulse.ui.components.models.StoredCalculationTableModel
Window - Interface in pulse.math
WINDOW - pulse.properties.NumericPropertyKeyword: Averaging window.
WolfeOptimiser - Class in pulse.search.linear: This is the implementation of the strong Wolfe conditions for performing inexact linear search.
work() - Method in interface pulse.ui.frames.dialogs.ProgressDialog.ProgressWorker
writeSplineFunction(PolynomialSplineFunction, ObjectOutputStream) - Static method in class pulse.util.FunctionSerializer
writeXML() - Static method in class pulse.io.export.XMLConverter: Utility method that creates an .xml file listing all public final static instances of NumericProperty found in the NumericProperty class.

X

x - Variable in class pulse.math.linear.RectangularMatrix
xCoord(MouseEvent) - Method in class pulse.ui.components.Chart
XMLConverter - Class in pulse.io.export: Used to read and write XML files containing information about the default NumericProperties.

Y

y0 - Variable in class pulse.problem.schemes.rte.dom.HermiteInterpolator
y1 - Variable in class pulse.problem.schemes.rte.dom.HermiteInterpolator

Z

ZScore - Class in pulse.math: This class finds peaks in data using the Z-score algorithm: https://en.wikipedia.org/wiki/Standard_score This splits the data into a number of population defined by the 'lag' number.
ZScore() - Constructor for class pulse.math.ZScore
ZScore(int, double, double) - Constructor for class pulse.math.ZScore

_

_2HTAU - Variable in class pulse.problem.schemes.solvers.ImplicitLinearisedSolver

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